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hypothetical_protein_pqer_cds_1155

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_1155__YP_009483846__Pandoravirus_quercus__2107709

Identity

Accession:: YP_009483846 ↗
Protein ID:: hypothetical_protein_pqer_cds_1155
Kingdom:: euk

Quality

71.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-51

PDB

Domain cluster: rep: hypothetical_protein_psal_cds_1385__YP_009430152__Pandoravirus_salinus__1349410__D6-52

D2 medium residues 57-120

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4qfvC02	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.79	65.0	6.49e-01	89.1%	86.2%
2lm9A00	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.70	57.0	5.00e-01	89.1%	96.9%
2v6eA02	1.20.1440.270	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.63	45.0	3.58e-01	75.0%	76.7%
3thxB03	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.60	45.0	3.35e-01	82.8%	76.6%
2nr4A02	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.57	43.0	4.45e-01	82.8%	94.8%
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.57	39.0	3.54e-01	71.9%	91.9%
1chkA02	3.30.386.10	Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2	0.50	38.0	3.50e-01	90.6%	60.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3575247	109.3.1.164 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4	0.84	76.0	5.45e-01	96.9%	37.6%
3721071	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.83	76.0	5.44e-01	98.4%	37.1%
3586401	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.77	62.0	4.76e-01	87.5%	40.0%
3900408	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.76	69.0	5.47e-01	100.0%	52.8%
4401282	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.63	40.0	3.31e-01	73.4%	35.7%
3455661	109.4.1.1269 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif	0.63	55.0	3.30e-01	100.0%	18.9%
3419226	109.4.1.3173 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase, Eplus_motif, E_motif	0.62	50.0	3.18e-01	90.6%	16.5%
3169267	109.36.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Protein transport protein SEC39 › Protein transport protein SEC39 › Sec39	0.60	51.0	2.92e-01	98.4%	17.9%
3781172	101.1.2.517 ↗	alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD	0.60	44.0	2.74e-01	79.7%	25.9%

D3 medium residues 148-276

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zh9B03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.60	46.0	4.66e-01	79.1%	94.4%
1x42A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.58	29.0	3.61e-01	89.9%	74.7%
2va8A03	1.10.3380.30	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold ›	0.57	42.0	3.52e-01	76.7%	68.5%
7y4rB01	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.55	30.0	3.28e-01	100.0%	62.3%
2ef8A00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.55	30.0	3.60e-01	87.6%	81.0%
3rrcB01	1.20.1310.20	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain	0.54	43.0	4.08e-01	86.8%	99.4%
4gytA00	1.20.120.740	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695	0.53	42.0	3.87e-01	87.6%	98.3%
5haxA01	1.20.58.1780	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	45.0	3.70e-01	94.6%	73.7%
1puoB00	1.20.920.50	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A ›	0.52	39.0	3.83e-01	79.1%	96.5%
2h7bA01	1.20.120.1110	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain	0.52	35.0	3.92e-01	77.5%	91.7%
6lcuA02	1.10.10.470	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4	0.51	28.0	3.06e-01	93.0%	64.8%
1c9bA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.50	35.0	3.88e-01	93.0%	93.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4534163	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.63	31.0	2.51e-01	93.8%	24.6%
3534586	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.60	33.0	2.95e-01	96.1%	37.8%
3425929	606.1.1.0 ↗	alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain	0.58	35.0	3.68e-01	86.8%	63.3%
2595336	3187.1.1.1 ↗	alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › MT	0.53	35.0	3.45e-01	89.1%	61.0%
3475296	3187.1.1.0 ↗	alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein	0.51	35.0	3.52e-01	94.6%	68.1%

D4 medium residues 277-365

PDB

Domain cluster: rep: hypothetical_protein_pdul_cds_1036__YP_008319978__Pandoravirus_dulcis__1349409__D278-363

D5 medium residues 506-613

PDB

Domain cluster: rep: hypothetical_protein_pdul_cds_1036__YP_008319978__Pandoravirus_dulcis__1349409__D503-605