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hypothetical_protein_pqer_cds_209

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_209__YP_009482900__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009482900 ↗
Protein ID:
hypothetical_protein_pqer_cds_209
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-162
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_1081__YP_008438371__Pandoravirus_salinus__1349410__D3-125
D2 high residues 176-246_264-300_331-385
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1591__YP_009120560__Pandoravirus_inopinatum__1605721__D181-198_210-259_277-315_339-420
D3 medium residues 395-456_477-544
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_529__YP_009482139__Pandoravirus_neocaledonia__2107708__D177-292
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.54 37.0 3.91e-01 73.8% 81.2%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.51 36.0 3.40e-01 71.5% 63.2%
2c2uA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 31.0 2.84e-01 73.8% 43.8%
4a4aA04 1.20.120.670 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase 0.51 40.0 3.20e-01 86.9% 90.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3676423 174.1.1.72 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2985 0.55 38.0 3.32e-01 70.0% 88.2%
3847522 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 39.0 3.06e-01 78.5% 57.9%
3582146 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.52 36.0 3.22e-01 70.8% 75.7%
3525755 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 46.0 3.57e-01 100.0% 88.1%
4021291 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 38.0 3.24e-01 79.2% 72.9%
3673192 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.50 38.0 3.57e-01 80.8% 92.4%
3226018 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.50 44.0 3.57e-01 98.5% 93.1%
3739538 109.4.1.474 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1_N 0.50 40.0 3.39e-01 86.9% 95.7%
D4 medium residues 545-616
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e3mB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.66 56.0 4.53e-01 100.0% 92.8%
3draA00 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.62 42.0 2.81e-01 70.8% 22.5%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.62 37.0 3.89e-01 70.8% 65.7%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.60 37.0 3.83e-01 72.2% 65.2%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.59 45.0 4.29e-01 83.3% 96.6%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.59 38.0 3.90e-01 72.2% 67.1%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 49.0 3.81e-01 88.9% 87.9%
3kezA03 1.25.40.900 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 49.0 4.26e-01 98.6% 72.6%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 40.0 3.86e-01 94.4% 64.7%
3vx4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 2.80e-01 79.2% 48.5%
3i01A01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 39.0 3.07e-01 80.6% 35.0%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 38.0 3.38e-01 76.4% 86.5%
1g8qA00 1.10.1450.10 Mainly Alpha › Orthogonal Bundle › Cd81 Antigen, Extracellular Domain; Chain: A › Tetraspanin 0.52 41.0 3.82e-01 83.3% 81.1%
4lgvA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 40.0 2.96e-01 81.9% 87.3%
1oj4A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 40.0 3.14e-01 84.7% 38.0%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 38.0 3.17e-01 79.2% 86.6%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.51 37.0 3.63e-01 76.4% 88.6%
5hexA01 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.51 41.0 2.90e-01 94.4% 92.8%
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 33.0 3.35e-01 84.7% 65.3%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 42.0 4.14e-01 90.3% 86.1%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.51 37.0 3.71e-01 80.6% 93.5%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 37.0 3.34e-01 80.6% 88.2%
5dicA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.51 38.0 3.37e-01 83.3% 95.7%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.51 34.0 3.35e-01 88.9% 62.2%
2nxpB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.50 41.0 3.47e-01 100.0% 97.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947493 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.67 55.0 4.91e-01 95.8% 91.8%
3705226 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.63 43.0 4.54e-01 79.2% 80.0%
3517790 601.48.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain 0.63 49.0 5.10e-01 86.1% 96.9%
3786815 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 48.0 4.63e-01 87.5% 72.9%
4260289 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 41.0 3.99e-01 73.6% 92.9%
4405099 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.59 36.0 3.72e-01 70.8% 62.9%
3727357 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 42.0 3.07e-01 81.9% 65.1%
4243415 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 40.0 2.74e-01 79.2% 22.2%
4880039 1178.1.1.0 ↗ 0.55 38.0 3.86e-01 80.6% 72.6%
3339530 101.1.22.1 ↗ alpha arrays › HTH › HTH › double HTH › HTH_RNase_II 0.55 46.0 4.08e-01 97.2% 66.4%
4888190 109.4.1.142 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.54 38.0 3.18e-01 75.0% 55.4%
3719856 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 47.0 3.73e-01 100.0% 57.4%
3786711 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.54 42.0 3.46e-01 86.1% 46.7%
3958989 184.1.1.0 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N 0.53 35.0 3.56e-01 83.3% 68.6%
3196401 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 34.0 3.79e-01 88.9% 85.5%
3944357 101.1.1.394 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4158 0.53 38.0 3.60e-01 95.8% 63.5%
4413999 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.52 34.0 3.45e-01 83.3% 68.6%
4058002 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.51 33.0 3.49e-01 83.3% 73.8%
3740778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 43.0 4.29e-01 93.1% 89.3%
4556778 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.50 42.0 3.76e-01 100.0% 80.0%