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hypothetical_protein_pqer_cds_253

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_253__YP_009482944__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009482944 ↗
Protein ID:
hypothetical_protein_pqer_cds_253
Kingdom:
euk

Quality

66.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-122
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1137__YP_009120106__Pandoravirus_inopinatum__1605721__D229-297
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.63 41.0 3.27e-01 100.0% 32.6%
3d36B01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.63 50.0 4.26e-01 91.6% 51.2%
6lgqC01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.63 49.0 4.46e-01 91.6% 61.8%
3a0rA03 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 49.0 4.28e-01 90.5% 57.5%
3n05A01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.60 41.0 2.90e-01 70.5% 75.2%
2g17A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 37.0 3.15e-01 93.7% 36.9%
4upiA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.59 48.0 3.05e-01 88.4% 68.7%
2iucA00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.59 49.0 3.39e-01 92.6% 95.3%
4tpvA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.58 50.0 4.16e-01 100.0% 81.3%
6g4gD01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.58 46.0 3.48e-01 89.5% 80.7%
3hkxA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.56 39.0 2.84e-01 71.6% 80.6%
2cvoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 36.0 3.01e-01 91.6% 37.1%
4p27A00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.55 48.0 4.13e-01 100.0% 89.0%
4v2pA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 37.0 3.14e-01 74.7% 94.8%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.52 36.0 3.73e-01 70.5% 100.0%
4ubtD00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 42.0 2.90e-01 90.5% 76.3%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.52 43.0 3.36e-01 92.6% 73.5%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 46.0 4.06e-01 100.0% 75.0%
1j31A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.51 35.0 2.61e-01 71.6% 79.7%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.51 38.0 3.38e-01 78.9% 94.3%
4d70A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.51 45.0 3.85e-01 100.0% 63.1%
7wvzA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 40.0 2.75e-01 89.5% 72.3%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.51 36.0 3.08e-01 92.6% 45.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037621 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.68 40.0 4.03e-01 96.8% 56.8%
4403429 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.67 56.0 4.79e-01 91.6% 56.1%
4009844 7503.1.1.18 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF30449 0.66 45.0 4.08e-01 70.5% 88.5%
4946456 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.66 54.0 4.59e-01 90.5% 55.3%
4093145 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.65 55.0 4.63e-01 91.6% 89.0%
5035201 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.64 53.0 4.46e-01 90.5% 54.2%
4973553 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.64 50.0 4.31e-01 89.5% 53.7%
5065474 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.63 49.0 4.24e-01 89.5% 53.3%
3929967 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.63 52.0 4.79e-01 94.7% 96.9%
3499933 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.62 52.0 4.76e-01 94.7% 96.2%
3924909 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.61 50.0 4.36e-01 91.6% 84.5%
3532103 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.61 51.0 4.56e-01 94.7% 97.1%
3288053 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.60 47.0 4.15e-01 89.5% 55.9%
3614061 864.1.1.8 ↗ a+b two layers › DLC › DLC › DLC › CEP76_C 0.60 50.0 4.44e-01 94.7% 97.2%
3472638 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.59 48.0 4.12e-01 92.6% 88.4%
3587540 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.59 50.0 4.22e-01 94.7% 98.8%
3940281 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 48.0 4.07e-01 92.6% 90.6%
3038255 7581.1.1.9 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_C 0.57 41.0 3.55e-01 75.8% 99.3%
3219587 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.56 49.0 4.40e-01 100.0% 78.6%
3579894 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 48.0 3.69e-01 96.8% 91.6%
4935959 7581.1.1.11 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › HMG_CoA_synt_C 0.55 38.0 2.88e-01 72.6% 86.5%
3854107 207.2.1.92 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Amnionless 0.55 48.0 3.97e-01 97.9% 77.1%
4936229 7581.1.1.15 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_C_1 0.53 37.0 2.54e-01 74.7% 55.9%
3996873 148.1.1.33 ↗ alpha arrays › Histone-like › Histone-related › Histone › Pecanex_C 0.52 37.0 2.81e-01 73.7% 77.7%
4981566 7581.1.1.0 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.52 36.0 3.06e-01 72.6% 83.0%
5022760 304.48.1.31 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Cas10-Cmr2_palm2 0.52 45.0 3.00e-01 100.0% 67.2%
3954094 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.52 37.0 2.75e-01 73.7% 86.1%
4935707 7581.1.1.0 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.51 36.0 3.08e-01 74.7% 94.5%
3285948 7581.1.1.9 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_C 0.50 35.0 3.29e-01 73.7% 96.7%
D2 high residues 173-270
PDB
D3 medium residues 327-407
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1137__YP_009120106__Pandoravirus_inopinatum__1605721__D229-297
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19178.6 best DUF5860 54.0 2.80e-14 100.0% 50.3%
D4 medium residues 418-510
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_643__YP_009482253__Pandoravirus_neocaledonia__2107708__D95-188
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19178.6 best DUF5860 83.2 3.10e-23 65.6% 36.5%