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hypothetical_protein_pqer_cds_316

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_316__YP_009483007__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483007 ↗
Protein ID:
hypothetical_protein_pqer_cds_316
Kingdom:
euk

Quality

69.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-75
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.83 58.0 5.35e-01 72.7% 64.7%
2d68A00 1.20.960.40 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.78 38.0 3.42e-01 78.2% 36.0%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.72 54.0 5.11e-01 81.8% 70.8%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.69 58.0 3.77e-01 96.4% 56.0%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 51.0 4.28e-01 85.5% 64.6%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.67 48.0 4.80e-01 76.4% 91.1%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.66 53.0 3.79e-01 89.1% 35.5%
4e12A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.66 46.0 3.97e-01 74.5% 74.7%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.65 46.0 3.36e-01 74.5% 43.6%
6tepC02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.64 51.0 3.64e-01 90.9% 34.3%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.64 44.0 3.06e-01 72.7% 83.5%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.63 47.0 3.99e-01 83.6% 51.0%
2ijeS00 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.62 51.0 3.29e-01 92.7% 20.7%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.60 46.0 4.14e-01 83.6% 96.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 43.0 3.63e-01 80.0% 57.6%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 51.0 3.99e-01 100.0% 83.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3998412 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 63.0 7.24e-01 74.5% 97.5%
3635440 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 58.0 6.09e-01 74.5% 78.0%
3888994 601.19.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein 0.85 65.0 4.61e-01 80.0% 92.4%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 57.0 5.27e-01 74.5% 57.1%
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 59.0 5.63e-01 76.4% 67.7%
3621592 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 57.0 5.92e-01 76.4% 80.0%
4061448 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.80 71.0 4.39e-01 100.0% 53.3%
3751898 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.79 54.0 4.97e-01 70.9% 55.7%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.78 68.0 3.98e-01 100.0% 43.8%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 54.0 5.12e-01 74.5% 61.5%
4011424 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 67.0 5.63e-01 94.5% 73.3%
3189161 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.76 67.0 3.92e-01 100.0% 52.9%
3628631 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 50.0 4.92e-01 72.7% 63.3%
3171073 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 56.0 4.40e-01 80.0% 39.1%
3639671 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.76 65.0 3.80e-01 100.0% 39.8%
3690417 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 67.0 3.92e-01 100.0% 55.0%
3726694 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.75 65.0 3.87e-01 100.0% 49.5%
3687689 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.75 67.0 4.07e-01 100.0% 44.7%
4021318 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 64.0 3.85e-01 98.2% 47.2%
4021018 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 64.0 3.63e-01 100.0% 28.0%
3463234 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 54.0 5.47e-01 78.2% 94.5%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.73 62.0 3.60e-01 100.0% 30.5%
3239855 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 48.0 5.14e-01 74.5% 82.2%
3238761 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 47.0 5.17e-01 72.7% 90.0%
3802856 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 50.0 5.06e-01 72.7% 74.5%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 54.0 4.63e-01 80.0% 84.7%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 54.0 4.83e-01 81.8% 79.5%
3442643 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 60.0 3.42e-01 94.5% 23.3%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.71 62.0 4.28e-01 100.0% 88.9%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 55.0 5.51e-01 83.6% 85.5%
3866275 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.71 60.0 3.64e-01 100.0% 45.0%
3206932 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 61.0 3.73e-01 100.0% 48.3%
3653326 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 49.0 5.32e-01 74.5% 93.3%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 58.0 5.14e-01 90.9% 69.2%
3213262 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 53.0 4.33e-01 81.8% 91.0%
3208423 109.3.1.168 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 0.70 49.0 2.85e-01 76.4% 11.6%
3236496 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 60.0 3.91e-01 100.0% 66.5%
3323668 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 55.0 5.00e-01 89.1% 70.7%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 53.0 4.60e-01 83.6% 64.7%
3194725 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 52.0 4.55e-01 83.6% 65.9%
3446267 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 47.0 4.78e-01 72.7% 74.5%
3436290 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 48.0 4.64e-01 76.4% 87.5%
3420574 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 46.0 4.97e-01 72.7% 88.9%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 55.0 4.71e-01 90.9% 57.8%
3443639 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 50.0 5.20e-01 80.0% 90.0%
3399970 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.67 57.0 3.80e-01 100.0% 82.1%
3250247 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 46.0 4.56e-01 74.5% 78.3%
3256545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 47.0 4.53e-01 76.4% 89.2%
3833527 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 46.0 4.58e-01 76.4% 88.3%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 53.0 4.69e-01 89.1% 68.8%
3222725 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 56.0 3.50e-01 96.4% 78.7%
3675534 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 53.0 4.72e-01 90.9% 62.5%
3237331 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.65 44.0 4.59e-01 72.7% 80.0%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 51.0 4.45e-01 89.1% 61.2%
3223791 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.64 49.0 4.82e-01 85.5% 91.7%
3188576 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 52.0 4.55e-01 92.7% 61.2%
4593317 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 49.0 4.80e-01 85.5% 91.7%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 54.0 3.13e-01 100.0% 80.3%
3257315 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 46.0 4.29e-01 83.6% 74.3%
3230101 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.57 45.0 3.28e-01 89.1% 80.6%
D2 high residues 202-371
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_357__YP_008437077__Pandoravirus_salinus__1349410__D224-353
D3 medium residues 76-89_122-201
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_1078__YP_009482688__Pandoravirus_neocaledonia__2107708__D193-222_251-286