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hypothetical_protein_pqer_cds_367

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_367__YP_009483058__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483058 ↗
Protein ID:
hypothetical_protein_pqer_cds_367
Kingdom:
euk

Quality

71.6 mean pLDDT

Taxonomy

TaxID: 2107709

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-160_205-227
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 26.0 3.47e-01 70.4% 85.0%
1lwjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 18.0 2.94e-01 73.7% 84.0%
1uyjA01 3.30.360.60 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.53 24.0 3.25e-01 77.0% 80.5%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.50 30.0 3.51e-01 71.7% 81.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589339 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.70 29.0 3.65e-01 72.4% 61.1%
5002092 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.58 30.0 3.83e-01 84.9% 84.4%
5012156 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 28.0 3.45e-01 79.6% 75.6%
5028231 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.56 29.0 3.30e-01 73.0% 65.5%
2665337 3264.1.1.0 0.51 37.0 3.70e-01 75.0% 99.4%
4033134 3264.1.1.0 0.51 35.0 3.61e-01 71.1% 79.3%
4069753 295.1.1.2 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.51 31.0 3.30e-01 73.7% 67.4%
D2 medium residues 161-193_253-295
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.81 58.0 5.32e-01 73.7% 65.3%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.81 63.0 5.91e-01 81.6% 96.7%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.80 51.0 6.21e-01 75.0% 100.0%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.80 59.0 5.25e-01 76.3% 59.2%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 55.0 5.60e-01 75.0% 74.0%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 57.0 5.57e-01 76.3% 70.4%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 52.0 4.59e-01 76.3% 47.7%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 59.0 5.08e-01 78.9% 62.3%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 58.0 5.13e-01 77.6% 56.6%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 55.0 3.81e-01 73.7% 25.7%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 62.0 6.71e-01 84.2% 98.5%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.77 55.0 4.30e-01 75.0% 47.1%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 59.0 6.02e-01 81.6% 89.2%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 54.0 5.58e-01 75.0% 76.7%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.76 56.0 4.17e-01 78.9% 31.4%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.76 55.0 6.07e-01 75.0% 96.7%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 61.0 6.06e-01 85.5% 83.3%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 52.0 5.93e-01 72.4% 96.5%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.75 56.0 5.17e-01 78.9% 68.0%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.75 56.0 5.76e-01 77.6% 90.1%
1ucuA01 6.10.280.190 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 54.0 5.66e-01 76.3% 83.8%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 53.0 5.46e-01 73.7% 80.3%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.74 51.0 5.52e-01 71.1% 83.1%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 52.0 5.42e-01 75.0% 93.0%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.72 52.0 5.54e-01 75.0% 90.6%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 53.0 5.31e-01 77.6% 92.2%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.72 53.0 5.12e-01 78.9% 96.6%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 50.0 4.98e-01 73.7% 70.5%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.71 50.0 3.83e-01 73.7% 32.6%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.70 55.0 3.57e-01 82.9% 85.1%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.70 56.0 5.39e-01 85.5% 80.0%
3c5iA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.70 55.0 3.73e-01 85.5% 37.2%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 48.0 5.12e-01 73.7% 88.1%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 54.0 4.78e-01 86.8% 58.0%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 54.0 4.88e-01 86.8% 79.4%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.68 46.0 4.25e-01 73.7% 52.9%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.68 52.0 3.21e-01 80.3% 23.8%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 48.0 5.00e-01 80.3% 85.5%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 48.0 4.80e-01 77.6% 90.9%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.65 42.0 4.53e-01 71.1% 76.9%
2fjcB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 48.0 3.84e-01 81.6% 84.6%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 53.0 4.26e-01 89.5% 72.7%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 44.0 4.68e-01 75.0% 87.5%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.63 45.0 4.34e-01 75.0% 71.8%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.62 47.0 4.17e-01 81.6% 55.4%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.62 43.0 4.74e-01 73.7% 94.8%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 43.0 4.55e-01 76.3% 80.9%
3e6sA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 49.0 3.88e-01 86.8% 82.4%
1rtwB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.62 53.0 3.92e-01 98.7% 70.2%
1s3qG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 48.0 3.81e-01 86.8% 79.1%
1lb3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 46.0 3.65e-01 82.9% 38.9%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.60 47.0 3.91e-01 84.2% 83.5%
4n06A02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.57 47.0 3.28e-01 92.1% 87.5%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.56 36.0 3.94e-01 82.9% 82.3%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.56 36.0 3.94e-01 71.1% 86.4%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.55 49.0 3.62e-01 100.0% 74.6%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.55 41.0 3.70e-01 84.2% 58.1%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.54 41.0 3.39e-01 81.6% 72.5%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.52 39.0 3.59e-01 84.2% 88.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3906191 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.81 62.0 4.75e-01 80.3% 38.7%
4315986 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.81 58.0 5.48e-01 80.3% 63.3%
3944240 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.81 58.0 5.49e-01 75.0% 63.3%
4206858 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.79 59.0 5.04e-01 77.6% 67.0%
3704098 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.79 57.0 4.28e-01 75.0% 36.5%
3545645 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.79 56.0 5.37e-01 76.3% 65.9%
3794577 3331.1.1.14 a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › CHDCT2 0.78 55.0 5.35e-01 73.7% 65.9%
4583258 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.78 56.0 3.38e-01 73.7% 13.0%
3167271 192.8.1.385 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med11 0.78 57.0 5.61e-01 76.3% 71.2%
3929573 192.8.1.395 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHDCT2 0.78 55.0 5.30e-01 76.3% 65.9%
4084570 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.77 61.0 6.35e-01 82.9% 95.7%
3377481 3846.1.1.0 alpha bundles › IcmR › IcmR › IcmR 0.76 57.0 6.39e-01 81.6% 100.0%
4494085 192.4.1.1 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.76 59.0 5.79e-01 81.6% 80.0%
3732397 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.76 54.0 4.62e-01 75.0% 51.7%
3592972 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 58.0 4.22e-01 80.3% 48.2%
5079947 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.75 60.0 4.88e-01 84.2% 52.6%
3565133 3755.3.1.44 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › JMY 0.75 54.0 4.58e-01 75.0% 64.2%
4038138 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 56.0 4.66e-01 80.3% 56.9%
4500746 4207.1.2.1 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med7 0.74 55.0 4.68e-01 80.3% 64.8%
5083304 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.73 56.0 4.54e-01 80.3% 72.6%
5012567 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 58.0 4.56e-01 84.2% 42.7%
3829282 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 54.0 4.43e-01 78.9% 48.1%
5057328 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.71 52.0 3.19e-01 76.3% 14.8%
3699444 3755.3.1.6 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Flagellar_rod 0.71 62.0 4.41e-01 94.7% 73.5%
5079886 159.1.1.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 0.70 52.0 5.31e-01 80.3% 85.3%
3711476 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 55.0 5.11e-01 88.2% 77.0%
3417475 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.68 57.0 3.48e-01 89.5% 24.6%
3469833 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.66 51.0 4.45e-01 85.5% 75.0%
5008343 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.65 54.0 4.82e-01 89.5% 91.4%
5006936 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.62 44.0 4.69e-01 75.0% 89.2%