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hypothetical_protein_pqer_cds_379
Euk-VirPandoravirus_quercus
hypothetical_protein_pqer_cds_379__YP_009483070__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483070 ↗
- Protein ID:
- hypothetical_protein_pqer_cds_379
- Kingdom:
- euk
Quality
66.4
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 434-526_538-556
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 40.0 | 4.71e-01 | 78.6% | 93.4% |
| 2kzfA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.62 | 43.0 | 4.44e-01 | 100.0% | 76.4% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.60 | 54.0 | 4.35e-01 | 100.0% | 97.2% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.57 | 38.0 | 4.20e-01 | 99.1% | 85.6% |
| 1w7cA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 4.36e-01 | 84.8% | 91.3% |
| 1ss4A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 32.0 | 2.93e-01 | 86.6% | 42.3% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 41.0 | 3.93e-01 | 81.2% | 91.0% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.53 | 37.0 | 3.43e-01 | 77.7% | 54.8% |
| 3ar4A04 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.52 | 43.0 | 3.32e-01 | 87.5% | 74.2% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 38.0 | 3.67e-01 | 77.7% | 93.9% |
| 3iuzA00 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.52 | 38.0 | 2.81e-01 | 76.8% | 82.5% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.93e-01 | 83.9% | 51.2% |
| 3g16B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.71e-01 | 87.5% | 86.8% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 44.0 | 3.93e-01 | 95.5% | 82.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4572149 | 809.2.1.4 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › Herpes_UL52 | 0.77 | 62.0 | 6.74e-01 | 92.0% | 100.0% |
| 3719984 | 243.16.1.0 ↗ | a+b two layers › Cystatin-like › hypothetical protein CLOLEP_02462 › hypothetical protein CLOLEP_02462 | 0.73 | 68.0 | 6.06e-01 | 100.0% | 98.1% |
| 3512045 | 292.2.1.8 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Herpes_UL52 | 0.72 | 66.0 | 5.92e-01 | 100.0% | 73.3% |
| 5054047 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.71 | 44.0 | 5.22e-01 | 92.0% | 93.3% |
| 3947082 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.65 | 41.0 | 4.57e-01 | 81.2% | 80.0% |
| 3291057 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 40.0 | 4.89e-01 | 72.3% | 100.0% |
| 3416116 | 883.1.1.3 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP | 0.61 | 55.0 | 4.43e-01 | 100.0% | 96.4% |
| 4331578 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.61 | 41.0 | 4.25e-01 | 71.4% | 72.4% |
| 4382051 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.61 | 41.0 | 4.07e-01 | 71.4% | 66.1% |
| 3394267 | 883.1.1.3 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP | 0.60 | 53.0 | 4.26e-01 | 100.0% | 95.6% |
| 5051985 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 41.0 | 4.44e-01 | 79.5% | 93.3% |
| 4975726 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.55 | 37.0 | 3.22e-01 | 95.5% | 42.8% |
| 4972587 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.55 | 45.0 | 4.04e-01 | 89.3% | 79.4% |
| 3230843 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 40.0 | 4.23e-01 | 94.6% | 87.0% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.55 | 41.0 | 4.22e-01 | 89.3% | 81.8% |
| 5044559 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 38.0 | 4.40e-01 | 82.1% | 100.0% |
| 4046546 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.53 | 45.0 | 3.34e-01 | 92.9% | 96.3% |
| 3418470 | 5.1.3.54 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 | 0.53 | 42.0 | 3.01e-01 | 83.9% | 80.3% |
| 3226352 | 2.3.1.1 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP | 0.53 | 37.0 | 3.60e-01 | 74.1% | 64.8% |
| 4529976 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.52 | 33.0 | 3.73e-01 | 84.8% | 84.7% |
| 4337720 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.52 | 27.0 | 3.24e-01 | 89.3% | 78.5% |
| 5082957 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.52 | 42.0 | 3.12e-01 | 86.6% | 74.4% |
| 3177317 | 5.1.4.221 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SGL | 0.52 | 48.0 | 3.30e-01 | 99.1% | 93.2% |
| 4340612 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.51 | 29.0 | 3.51e-01 | 84.8% | 92.3% |
| 3970022 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 32.0 | 3.45e-01 | 86.6% | 73.7% |
| 4960615 | 5.1.3.277 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7133 | 0.51 | 38.0 | 2.75e-01 | 79.5% | 54.0% |
| 4958845 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.50 | 44.0 | 4.12e-01 | 95.5% | 80.7% |
D2
medium
residues 59-95_107-154_298-311_373-385
D3
medium
residues 155-268_285-297_312-322_335-372_386-419
Domain cluster:
rep: primase__YP_009345453__Noumeavirus__1955558__D12-194
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23162.2 best | AEP_C962R | 25.9 | 1.40e-05 | 49.0% | 44.9% |