←Back to structures

hypothetical_protein_pqer_cds_382

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_382__YP_009483073__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483073 ↗
Protein ID:
hypothetical_protein_pqer_cds_382
Kingdom:
euk

Quality

71.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-170
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_984__YP_009483675__Pandoravirus_quercus__2107709__D76-182_203-236
D2 high residues 207-352
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1591__YP_009120560__Pandoravirus_inopinatum__1605721__D181-198_210-259_277-315_339-420
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 26.0 3.53e-01 100.0% 81.3%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 46.0 4.83e-01 95.9% 100.0%
4ogcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 42.0 3.85e-01 84.9% 93.8%
2v1lA00 3.10.450.430 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 0.52 36.0 3.80e-01 93.2% 79.8%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 44.0 4.28e-01 95.9% 95.8%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 42.0 3.18e-01 91.1% 81.6%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.50 43.0 3.59e-01 91.1% 93.5%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 25.0 2.89e-01 94.5% 62.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3454372 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.62 36.0 4.21e-01 94.5% 82.0%
4429348 2484.1.1.311 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, DDR, FtsA 0.58 51.0 3.71e-01 97.9% 94.0%
11195 2484.1.1.56 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR 0.57 32.0 3.84e-01 90.4% 84.8%
3445404 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.56 33.0 3.94e-01 92.5% 85.0%
3681710 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.56 34.0 4.13e-01 94.5% 93.7%
3976937 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.55 49.0 3.62e-01 97.9% 96.5%
3940510 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.52 29.0 3.68e-01 88.4% 97.5%
3947630 2484.1.1.56 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR 0.51 44.0 3.20e-01 95.9% 98.9%
4571749 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.51 44.0 4.31e-01 95.9% 94.5%
4311344 4252.1.1.13 ↗ beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.51 34.0 3.72e-01 93.8% 82.6%
5063324 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.51 39.0 4.15e-01 80.1% 99.2%
5043415 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 39.0 4.27e-01 95.2% 95.8%
5009779 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.50 38.0 4.03e-01 79.5% 99.2%
3927497 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.50 28.0 3.49e-01 89.0% 95.0%
D3 medium residues 353-492
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_984__YP_009483675__Pandoravirus_quercus__2107709__D450-572
D4 medium residues 524-601
PDB