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hypothetical_protein_pqer_cds_54

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_54__YP_009482745__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009482745 ↗
Protein ID:
hypothetical_protein_pqer_cds_54
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-136
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_749__YP_009481433__Pandoravirus_macleodensis__2107707__D23-114
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.62 50.0 4.40e-01 86.7% 95.1%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.57 39.0 2.85e-01 70.4% 91.1%
3jvnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 35.0 3.30e-01 79.6% 51.6%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 42.0 3.51e-01 82.7% 87.0%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 37.0 2.60e-01 72.4% 37.8%
3ljsA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 36.0 2.56e-01 71.4% 39.0%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.82e-01 90.8% 79.0%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.67e-01 88.8% 93.2%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.44e-01 88.8% 95.6%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 37.0 2.73e-01 75.5% 67.0%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 42.0 2.81e-01 89.8% 92.1%
4rr9A01 3.50.80.10 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase 0.51 37.0 3.44e-01 78.6% 88.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3854881 3769.1.1.0 ↗ 0.60 35.0 4.10e-01 79.6% 86.2%
3544841 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.59 40.0 3.65e-01 70.4% 68.1%
3483323 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 47.0 3.46e-01 88.8% 77.5%
3410016 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 46.0 3.86e-01 86.7% 92.9%
3246486 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 38.0 2.92e-01 71.4% 48.0%
5007276 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 44.0 3.93e-01 87.8% 92.9%
3516502 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 27.0 3.07e-01 70.4% 60.0%
3895559 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.54 44.0 3.32e-01 88.8% 58.3%
4321103 11.1.1.913 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29899 0.53 45.0 3.64e-01 93.9% 88.7%
3232476 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 29.0 2.90e-01 73.5% 51.0%
3529423 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 42.0 3.87e-01 88.8% 90.8%
4927417 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 37.0 2.83e-01 74.5% 66.7%
3601595 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 45.0 3.53e-01 100.0% 97.3%
4939745 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.51 38.0 2.94e-01 78.6% 51.8%
4384109 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 35.0 3.62e-01 100.0% 79.5%
3555863 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 42.0 3.95e-01 92.9% 80.0%
4011908 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.50 42.0 3.45e-01 92.9% 82.2%
3723374 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 34.0 2.43e-01 70.4% 85.9%
4001104 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.50 42.0 3.41e-01 91.8% 89.2%
D2 high residues 191-289
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o5fB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 37.0 3.18e-01 74.7% 72.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2637214 211.1.1.4 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › HGLS 0.54 37.0 3.08e-01 71.7% 96.9%
1247755 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 38.0 3.27e-01 73.7% 65.6%
4937959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 37.0 3.44e-01 71.7% 76.8%
1247709 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 38.0 3.23e-01 75.8% 61.2%