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hypothetical_protein_pqer_cds_554

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_554__YP_009483245__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483245 ↗
Protein ID:
hypothetical_protein_pqer_cds_554
Kingdom:
euk

Quality

73.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-98
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 61.0 3.90e-01 100.0% 29.0%
2zfuA01 1.10.10.2150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal RNA-processing protein 8, N-terminal domain 0.60 42.0 4.24e-01 76.9% 84.3%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.15e-01 82.7% 75.8%
5a4uF02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 47.0 3.76e-01 98.1% 52.9%
4ielA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 47.0 3.80e-01 96.2% 74.1%
2pqrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 49.0 4.12e-01 98.1% 61.3%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 46.0 4.29e-01 100.0% 98.6%
2o4cA03 3.30.1370.170 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain 0.57 42.0 3.55e-01 78.8% 87.5%
2iu5B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 45.0 3.33e-01 100.0% 71.8%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 43.0 3.40e-01 88.5% 71.9%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 45.0 3.75e-01 96.2% 79.2%
3umvA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 45.0 3.26e-01 92.3% 39.2%
3uarA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 44.0 3.69e-01 96.2% 74.8%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 43.0 4.00e-01 96.2% 93.2%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.55 44.0 3.61e-01 96.2% 76.9%
2kjfA00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.55 40.0 3.91e-01 84.6% 80.0%
1hx8A02 1.20.58.150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › ANTH domain 0.54 44.0 3.56e-01 98.1% 73.5%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.54 38.0 3.39e-01 73.1% 69.6%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 43.0 3.62e-01 100.0% 84.3%
4xjvA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 42.0 2.89e-01 92.3% 30.1%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.54 36.0 3.47e-01 71.2% 61.5%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 41.0 3.18e-01 100.0% 92.3%
2fgeA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 38.0 2.55e-01 88.5% 40.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3432900 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 60.0 6.30e-01 82.7% 86.7%
3191430 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 75.0 6.38e-01 100.0% 98.8%
3226289 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 60.0 6.54e-01 88.5% 100.0%
3707440 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 52.0 5.97e-01 78.8% 100.0%
3721004 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 65.0 5.36e-01 92.3% 50.0%
3459106 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 54.0 5.75e-01 80.8% 80.0%
3456838 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 51.0 5.72e-01 73.1% 100.0%
3439381 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 57.0 5.36e-01 82.7% 64.6%
3656669 207.1.1.245 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, LRR_At5g56370, DUF7885 0.73 63.0 3.54e-01 100.0% 10.5%
3411800 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 52.0 5.58e-01 84.6% 100.0%
3227162 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 51.0 5.55e-01 82.7% 100.0%
3253203 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 60.0 6.15e-01 92.3% 98.0%
3650513 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 61.0 6.00e-01 96.2% 90.9%
4029077 3184.1.1.0 ↗ alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain 0.68 50.0 4.87e-01 80.8% 85.0%
3353640 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.67 55.0 5.10e-01 96.2% 100.0%
3685135 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.67 56.0 3.72e-01 100.0% 41.3%
4028410 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.65 53.0 5.30e-01 92.3% 100.0%
4203110 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 51.0 5.33e-01 90.4% 100.0%
3294389 3184.1.1.1 ↗ alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.65 46.0 4.46e-01 76.9% 81.7%
3390130 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 3.19e-01 100.0% 20.9%
3271959 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 49.0 4.14e-01 100.0% 84.2%
3781427 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.58 49.0 3.74e-01 94.2% 53.6%
3189269 3184.1.1.1 ↗ alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.58 47.0 4.12e-01 92.3% 92.8%
3386184 2004.1.1.439 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF26341 0.57 42.0 2.87e-01 80.8% 27.0%
4951881 317.1.1.3 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Bles03 0.55 44.0 3.08e-01 94.2% 65.6%
3479389 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.54 45.0 3.20e-01 100.0% 46.5%
3165248 2004.1.1.187 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.50 41.0 2.86e-01 100.0% 24.9%
D2 medium residues 99-184
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.59 34.0 3.53e-01 74.4% 61.3%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.55 38.0 3.13e-01 80.2% 41.4%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.54 34.0 3.62e-01 72.1% 72.4%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.54 37.0 3.58e-01 77.9% 63.5%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 41.0 3.39e-01 82.6% 51.7%
2h8aA00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.52 35.0 3.17e-01 70.9% 83.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3580238 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.62 39.0 3.26e-01 74.4% 37.2%
3657422 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.59 40.0 4.01e-01 74.4% 67.8%
3608731 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.57 37.0 4.11e-01 74.4% 81.4%
4527330 7010.1.1.0 ↗ alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator 0.56 42.0 4.59e-01 90.7% 97.1%
4626442 7010.1.1.0 ↗ alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator 0.55 36.0 4.26e-01 73.3% 96.7%
3382511 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 45.0 2.96e-01 96.5% 95.4%
None — 0.51 34.0 2.70e-01 77.9% 30.8%
3878055 150.3.1.25 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL34 0.50 38.0 2.97e-01 79.1% 48.0%
D3 medium residues 185-247
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.56 47.0 4.55e-01 100.0% 84.0%
7xv3R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 35.0 2.40e-01 74.6% 40.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3817685 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.55 45.0 2.76e-01 98.4% 65.4%
3457719 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.50 35.0 2.10e-01 74.6% 10.2%
D4 medium residues 248-316_339-425
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1026__YP_009119995__Pandoravirus_inopinatum__1605721__D192-256_273-350