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hypothetical_protein_pqer_cds_556

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_556__YP_009483247__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483247 ↗
Protein ID:
hypothetical_protein_pqer_cds_556
Kingdom:
euk

Quality

72.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-93
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 44.0 3.63e-01 73.5% 79.9%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.61 38.0 3.60e-01 85.5% 52.5%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 34.0 3.21e-01 84.3% 46.4%
3u8zD02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.59 39.0 4.14e-01 100.0% 78.6%
1kmiZ02 1.10.287.500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 35.0 2.96e-01 84.3% 36.6%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 42.0 3.56e-01 77.1% 86.1%
1n1bB02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 44.0 3.06e-01 83.1% 86.4%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.58 33.0 3.06e-01 84.3% 43.0%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.57 33.0 2.96e-01 84.3% 39.0%
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.57 44.0 4.20e-01 89.2% 70.7%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.57 39.0 4.08e-01 100.0% 77.6%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.57 43.0 4.39e-01 86.7% 84.0%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 40.0 4.15e-01 98.8% 82.7%
2k8oA00 1.20.5.2120 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 34.0 3.84e-01 92.8% 83.3%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.55 43.0 3.54e-01 86.7% 58.1%
2of7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 39.0 3.30e-01 75.9% 82.9%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 39.0 3.76e-01 100.0% 66.7%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.54 41.0 3.71e-01 83.1% 71.4%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 32.0 2.57e-01 84.3% 29.8%
1aluA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 37.0 3.03e-01 73.5% 94.3%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.52 36.0 3.61e-01 89.2% 69.4%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 32.0 3.05e-01 84.3% 50.5%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 38.0 3.98e-01 100.0% 89.2%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.52 36.0 3.79e-01 86.7% 82.4%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 36.0 2.84e-01 72.3% 46.9%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 39.0 2.89e-01 81.9% 67.5%
1eq1A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.52 41.0 3.34e-01 88.0% 57.2%
2q0tB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 39.0 2.89e-01 84.3% 67.5%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.51 31.0 3.35e-01 72.3% 70.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970705 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.68 50.0 5.10e-01 100.0% 80.0%
4981740 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.66 44.0 4.84e-01 100.0% 87.7%
4938670 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 45.0 4.73e-01 100.0% 81.3%
5060846 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 45.0 4.67e-01 100.0% 81.3%
3432597 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.63 44.0 4.12e-01 73.5% 79.0%
5054168 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 43.0 4.73e-01 100.0% 92.3%
3443208 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 42.0 4.31e-01 86.7% 73.8%
4995204 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 42.0 4.54e-01 100.0% 87.1%
5028218 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 40.0 4.41e-01 100.0% 87.7%
5014266 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 42.0 4.42e-01 100.0% 81.3%
5060140 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 41.0 4.48e-01 100.0% 92.3%
4973584 604.3.1.51 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › 8xMP 0.59 34.0 3.38e-01 84.3% 52.3%
3585899 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.58 33.0 3.02e-01 84.3% 41.8%
3222930 148.1.3.229 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7809 0.58 43.0 3.50e-01 91.6% 40.6%
3419991 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 40.0 3.88e-01 81.9% 64.2%
5064089 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 41.0 4.24e-01 100.0% 82.7%
3268588 604.6.1.22 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 0.57 33.0 3.06e-01 84.3% 41.8%
5044069 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 41.0 4.16e-01 100.0% 78.8%
3501984 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.57 40.0 4.38e-01 100.0% 95.4%
3775067 198.1.1.21 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA, SapB_2 0.56 34.0 3.06e-01 90.4% 40.8%
3643902 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.56 36.0 3.11e-01 84.3% 41.5%
3403706 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.56 41.0 3.71e-01 79.5% 74.2%
4970972 604.5.1.83 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › NfeD_membrane 0.56 33.0 3.37e-01 84.3% 60.0%
3236976 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.56 42.0 3.45e-01 100.0% 44.0%
4009174 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 41.0 4.45e-01 100.0% 100.0%
5014264 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.55 45.0 4.40e-01 100.0% 81.1%
4975372 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.55 44.0 3.91e-01 86.7% 80.0%
3980499 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.55 40.0 4.41e-01 100.0% 100.0%
5072045 604.10.1.0 ↗ alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac 0.54 32.0 2.97e-01 84.3% 45.7%
3714092 3542.1.1.3 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.54 44.0 3.08e-01 90.4% 44.6%
3710677 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.54 36.0 3.10e-01 77.1% 44.8%
3965779 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.54 48.0 3.39e-01 100.0% 55.5%
3600920 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 43.0 3.56e-01 89.2% 79.4%
3346986 3711.1.1.4 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.54 43.0 3.36e-01 92.8% 58.0%
3841645 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.53 33.0 3.16e-01 84.3% 52.0%
5058368 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 42.0 4.18e-01 100.0% 82.0%
4931960 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.52 43.0 4.06e-01 92.8% 81.9%
5049362 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.52 40.0 3.82e-01 97.6% 70.0%
4995682 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 42.0 4.14e-01 100.0% 83.3%
3539434 633.21.1.40 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › AGMP_C 0.51 37.0 2.98e-01 75.9% 78.8%
D2 high residues 119-184_203-325
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1591__YP_009120560__Pandoravirus_inopinatum__1605721__D181-198_210-259_277-315_339-420
D3 high residues 345-444
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_529__YP_009482139__Pandoravirus_neocaledonia__2107708__D177-292
D4 high residues 483-550_562-611
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_616__YP_008319411__Pandoravirus_dulcis__1349409__D463-608