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hypothetical_protein_pqer_cds_630

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_630__YP_009483321__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483321 ↗
Protein ID:
hypothetical_protein_pqer_cds_630
Kingdom:
euk

Quality

66.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 155-338
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 38.0 4.67e-01 84.8% 91.1%
2csxA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.63 40.0 4.20e-01 77.7% 69.3%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.62 40.0 4.36e-01 79.9% 76.8%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 40.0 4.36e-01 100.0% 77.1%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 39.0 4.23e-01 100.0% 74.1%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 38.0 4.49e-01 87.5% 91.1%
1qqtA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 37.0 4.16e-01 77.2% 80.4%
4qreA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 40.0 4.13e-01 80.4% 72.3%
2aboA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.59 29.0 3.37e-01 81.5% 63.4%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 31.0 3.60e-01 98.4% 72.2%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 34.0 4.00e-01 89.1% 87.2%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 35.0 3.90e-01 92.9% 86.1%
2yhcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 35.0 3.37e-01 100.0% 57.4%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.53 40.0 4.19e-01 77.7% 100.0%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 37.0 4.22e-01 82.6% 95.7%
3dyjA02 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.52 33.0 3.62e-01 84.2% 75.5%
3a6pA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 47.0 2.93e-01 100.0% 19.5%
3o2tA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 47.0 3.99e-01 100.0% 69.7%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.51 31.0 3.83e-01 76.1% 97.4%
3bbyA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 32.0 3.83e-01 89.7% 98.3%
2nwbA02 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 46.0 4.24e-01 99.5% 90.7%
3au3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 45.0 3.89e-01 100.0% 67.1%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.50 34.0 3.72e-01 87.0% 82.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4881792 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.62 47.0 5.22e-01 99.5% 100.0%
3271461 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 4.22e-01 97.3% 48.2%
4881788 271.1.1.0 ↗ beta barrels › GFP-like › GFP-like › GFP-like 0.61 49.0 4.53e-01 100.0% 67.2%
3499451 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 54.0 3.85e-01 100.0% 43.7%
3499438 109.4.1.936 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ULK4 0.59 54.0 3.50e-01 100.0% 28.8%
3738663 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.55 43.0 4.51e-01 96.7% 89.7%
3861391 109.4.1.1367 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26723 0.54 49.0 3.93e-01 99.5% 49.2%
3223368 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.53 35.0 3.77e-01 77.2% 76.1%
3174254 109.4.1.58 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 0.53 48.0 4.42e-01 98.4% 87.9%
3411108 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.53 33.0 3.81e-01 77.2% 83.7%
3033370 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.53 37.0 4.08e-01 82.1% 88.0%
3423003 109.4.1.359 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C 0.52 47.0 3.55e-01 100.0% 55.3%
4012037 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 36.0 3.71e-01 78.3% 73.3%
3389689 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 35.0 3.77e-01 78.8% 81.2%
3722755 109.4.1.903 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_28 0.51 47.0 3.76e-01 100.0% 75.1%
4016501 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.51 47.0 3.56e-01 100.0% 48.6%
3578489 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.51 40.0 3.96e-01 81.5% 94.2%
3782407 109.4.1.308 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps39_1 0.51 35.0 2.84e-01 100.0% 37.1%
3708648 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 45.0 3.72e-01 95.7% 64.9%
D2 medium residues 339-483
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_631__YP_009483322__Pandoravirus_quercus__2107709__D164-285
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19185.6 best DUF5867 45.4 8.30e-12 97.2% 46.6%
D3 medium residues 521-660
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19185.6 best DUF5867 91.3 8.60e-26 70.7% 36.2%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.74 23.0 4.03e-01 90.7% 84.8%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 31.0 3.85e-01 82.9% 73.6%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.58 37.0 4.03e-01 95.0% 76.7%
1tjcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 32.0 3.81e-01 94.3% 86.3%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 30.0 3.02e-01 83.6% 54.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.59 28.0 3.76e-01 74.3% 90.8%
3208252 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.58 38.0 4.37e-01 71.4% 92.0%
3579643 109.7.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › TRAPPC9-Trs120 0.56 38.0 4.19e-01 90.7% 83.5%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.55 32.0 4.04e-01 83.6% 96.5%
4011424 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.54 33.0 4.00e-01 93.6% 93.3%
3209923 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 40.0 4.31e-01 93.6% 91.7%
3624439 611.4.1.0 ↗ alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like 0.51 42.0 3.94e-01 88.6% 95.2%
3525915 192.8.1.272 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › F-box 0.50 41.0 4.00e-01 87.9% 92.3%
D4 medium residues 661-830
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp0893__YP_009119862__Pandoravirus_inopinatum__1605721__D99-254