←Back to structures

hypothetical_protein_pqer_cds_643

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_643__YP_009483334__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483334 ↗
Protein ID:
hypothetical_protein_pqer_cds_643
Kingdom:
euk

Quality

68.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-150
PDB
D2 high residues 169-335
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.61 25.0 3.87e-01 90.4% 96.8%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 40.0 3.42e-01 85.0% 44.5%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 37.0 3.49e-01 88.6% 57.1%
1a9xA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 37.0 3.39e-01 81.4% 53.9%
2kinA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 30.0 2.69e-01 86.8% 37.8%
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 39.0 4.22e-01 88.6% 89.6%
2pvpA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 38.0 4.00e-01 89.2% 87.0%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.78e-01 95.2% 91.3%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 39.0 3.45e-01 79.0% 87.5%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 38.0 3.93e-01 87.4% 83.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053641 4139.1.1.1 ↗ a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 0.62 29.0 3.27e-01 86.2% 56.2%
4385740 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 27.0 3.43e-01 83.8% 70.5%
4531428 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.58 30.0 2.95e-01 85.6% 45.0%
5062370 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 35.0 3.90e-01 91.6% 75.6%
3265309 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.54 34.0 3.70e-01 93.4% 73.6%
3781161 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.50 27.0 2.95e-01 86.2% 60.0%
D3 high residues 349-450
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_100__YP_008318674__Pandoravirus_dulcis__1349409__D331-425
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.67 48.0 4.90e-01 74.5% 85.0%
3rkoF01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.61 37.0 3.21e-01 87.3% 38.7%
3fgaB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 42.0 2.80e-01 75.5% 45.9%
4c9bB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 50.0 3.69e-01 99.0% 89.5%
2py6A01 1.20.1270.160 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 29.0 3.25e-01 79.4% 63.0%
1nf1A02 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.55 43.0 3.64e-01 85.3% 100.0%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 39.0 3.78e-01 77.5% 72.3%
7dwqL01 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.51 37.0 3.43e-01 74.5% 61.6%
1dgfA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.51 34.0 3.35e-01 80.4% 61.4%
3wurA00 1.20.1420.60 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › 0.51 45.0 3.91e-01 100.0% 84.6%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.51 37.0 3.72e-01 86.3% 74.5%
1m2oA04 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.51 37.0 3.37e-01 76.5% 72.3%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 36.0 3.18e-01 74.5% 51.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008556 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.61 38.0 4.11e-01 84.3% 74.1%
3244085 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.60 42.0 3.65e-01 72.5% 85.6%
3613843 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 42.0 2.95e-01 73.5% 83.2%
3710396 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 4.03e-01 94.1% 75.8%
3715165 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 43.0 3.06e-01 82.4% 86.4%
3993557 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 46.0 3.77e-01 94.1% 54.6%
4247463 109.4.1.1145 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IQ 0.54 47.0 2.97e-01 97.1% 37.9%
3616524 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.53 43.0 3.48e-01 86.3% 49.7%
3567919 109.4.1.308 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps39_1 0.53 39.0 2.76e-01 77.5% 25.9%
3271497 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 43.0 3.16e-01 90.2% 48.0%
3582304 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.63e-01 91.2% 58.3%
3488061 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.28e-01 89.2% 89.6%
4400236 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.51 41.0 4.07e-01 84.3% 84.8%
5056184 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.51 44.0 3.10e-01 100.0% 51.7%
4001433 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.50 36.0 3.06e-01 73.5% 45.3%