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hypothetical_protein_pqer_cds_699
Euk-VirPandoravirus_quercus
hypothetical_protein_pqer_cds_699__YP_009483390__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483390 ↗
- Protein ID:
- hypothetical_protein_pqer_cds_699
- Kingdom:
- euk
Quality
68.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-150
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19166.7 best | DUF5848 | 71.5 | 6.80e-20 | 42.1% | 98.4% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hl4A01 | 1.10.8.1310 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 37.0 | 3.69e-01 | 95.0% | 53.4% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 35.0 | 3.50e-01 | 78.6% | 59.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3451722 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.59 | 34.0 | 3.61e-01 | 83.6% | 62.4% |
| 3491487 | 5001.1.1.8 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HlyIII | 0.59 | 44.0 | 3.86e-01 | 77.9% | 99.0% |
D2
high
residues 180-236
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xe4A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.73 | 60.0 | 4.44e-01 | 96.5% | 41.5% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.65 | 51.0 | 3.50e-01 | 87.7% | 40.4% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.65 | 54.0 | 4.83e-01 | 100.0% | 75.3% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.63 | 54.0 | 4.45e-01 | 100.0% | 55.0% |
| 3f8kA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 51.0 | 4.05e-01 | 100.0% | 42.7% |
| 2lxrA00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.61 | 52.0 | 4.77e-01 | 96.5% | 80.3% |
| 1ejdA01 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.61 | 48.0 | 3.31e-01 | 94.7% | 24.2% |
| 1u6mA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 51.0 | 3.63e-01 | 100.0% | 32.3% |
| 1xebA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 51.0 | 3.89e-01 | 100.0% | 40.3% |
| 7pzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 51.0 | 4.50e-01 | 98.2% | 80.2% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 3.88e-01 | 80.7% | 65.5% |
| 3zx4A02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.58 | 52.0 | 4.49e-01 | 100.0% | 79.3% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.57 | 49.0 | 3.56e-01 | 100.0% | 39.8% |
| 4n3pA02 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.56 | 46.0 | 3.27e-01 | 100.0% | 93.3% |
| 1kytA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.55 | 43.0 | 4.18e-01 | 87.7% | 89.1% |
| 4efjA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 43.0 | 3.27e-01 | 87.7% | 35.7% |
| 4ab7H02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 43.0 | 3.30e-01 | 100.0% | 34.9% |
| 7m0oA02 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.54 | 43.0 | 3.15e-01 | 100.0% | 29.3% |
| 1x0cA01 | 2.60.350.10 | Mainly Beta › Sandwich › Dex49a from penicillium minioluteum complex, domain 1 › Dextranase, N-terminal | 0.54 | 40.0 | 3.01e-01 | 98.2% | 28.7% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 4.23e-01 | 98.2% | 93.8% |
| 3v8hC00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.53 | 40.0 | 2.60e-01 | 84.2% | 37.5% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 41.0 | 3.91e-01 | 100.0% | 74.7% |
| 4k30A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 3.08e-01 | 100.0% | 34.6% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3992039 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.72 | 62.0 | 5.37e-01 | 100.0% | 67.0% |
| 5016597 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.69 | 59.0 | 4.95e-01 | 100.0% | 62.9% |
| 4004341 | 101.1.2.775 ↗ | alpha arrays › HTH › HTH › winged helix domain › SieB | 0.69 | 54.0 | 4.78e-01 | 100.0% | 58.8% |
| 5076582 | 2003.1.12.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › UDPG/MGDP dehydrogenase C-terminal domain › UDPG_MGDP_dh_C | 0.68 | 52.0 | 3.90e-01 | 100.0% | 32.7% |
| 4993845 | 320.3.1.4 ↗ | a+b two layers › R3H domain-like › PG1857-like › PG1857-like › DUF483 | 0.65 | 52.0 | 3.88e-01 | 100.0% | 33.5% |
| 3781863 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.60 | 48.0 | 3.02e-01 | 96.5% | 15.5% |
| 4858172 | 3517.1.1.2 ↗ | a+b complex topology › Polymerase acidic protein › Polymerase acidic protein › Polymerase acidic protein › Bunya_RdRp | 0.60 | 45.0 | 3.00e-01 | 84.2% | 29.9% |
| 1885538 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.58 | 49.0 | 4.01e-01 | 100.0% | 51.7% |
| 4974954 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.58 | 49.0 | 3.62e-01 | 100.0% | 37.6% |
| 5025092 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.57 | 38.0 | 3.55e-01 | 77.2% | 52.0% |
| 4933147 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.57 | 43.0 | 3.63e-01 | 100.0% | 46.7% |
| 4038616 | 3110.1.1.10 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › PF30401 | 0.55 | 46.0 | 3.79e-01 | 96.5% | 63.7% |
| 4957800 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.55 | 44.0 | 4.49e-01 | 94.7% | 90.9% |
| 3987502 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.55 | 38.0 | 2.79e-01 | 82.5% | 24.0% |
| 3742387 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.54 | 45.0 | 2.78e-01 | 98.2% | 54.6% |
| 4561853 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.53 | 44.0 | 3.74e-01 | 100.0% | 55.2% |
| 3777532 | 898.1.1.0 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 | 0.53 | 46.0 | 3.94e-01 | 100.0% | 68.4% |
| 4031032 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.52 | 42.0 | 2.85e-01 | 98.2% | 92.8% |
| 3924909 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.51 | 42.0 | 3.17e-01 | 94.7% | 64.5% |
| 3879225 | 213.1.1.11 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT | 0.51 | 41.0 | 3.22e-01 | 100.0% | 84.0% |