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hypothetical_protein_pqer_cds_703

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_703__YP_009483394__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483394 ↗
Protein ID:
hypothetical_protein_pqer_cds_703
Kingdom:
euk

Quality

73.2 mean pLDDT

Taxonomy

TaxID: 2107709

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-118
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jr3C02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.68 46.0 4.24e-01 71.3% 54.1%
4o6yB00 1.20.120.1770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 59.0 4.60e-01 100.0% 86.7%
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 42.0 4.00e-01 88.3% 54.1%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.63 42.0 3.93e-01 92.6% 54.3%
3lk5A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 55.0 3.82e-01 98.9% 83.2%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.63 43.0 3.80e-01 70.2% 100.0%
1w53A00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.62 35.0 3.69e-01 81.9% 60.7%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 35.0 3.86e-01 74.5% 68.9%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.62 44.0 4.57e-01 90.4% 82.4%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.62 43.0 4.16e-01 72.3% 82.9%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 36.0 4.10e-01 73.4% 79.4%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 48.0 4.84e-01 85.1% 84.0%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 43.0 4.73e-01 84.0% 92.3%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.77e-01 90.4% 89.1%
4akgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.58 43.0 3.59e-01 87.2% 44.0%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.72e-01 90.4% 93.3%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.58 52.0 4.29e-01 100.0% 72.8%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.63e-01 91.5% 99.1%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.58 39.0 3.98e-01 100.0% 72.2%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 43.0 4.43e-01 92.6% 86.2%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 38.0 4.13e-01 73.4% 81.8%
1oj7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.57 47.0 3.70e-01 90.4% 63.7%
6l1kA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.57 46.0 3.70e-01 90.4% 60.4%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 47.0 4.61e-01 90.4% 90.1%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.55 37.0 4.16e-01 71.3% 89.0%
2g2dA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.55 49.0 4.11e-01 100.0% 73.1%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.55 42.0 4.02e-01 83.0% 93.8%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 42.0 3.28e-01 81.9% 76.5%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 45.0 4.30e-01 95.7% 78.9%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 44.0 4.12e-01 91.5% 87.5%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 42.0 3.69e-01 100.0% 56.8%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.53 41.0 3.27e-01 81.9% 79.3%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 44.0 4.25e-01 91.5% 85.2%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.53 37.0 3.79e-01 93.6% 76.4%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.52 43.0 3.97e-01 89.4% 77.5%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.52 38.0 3.73e-01 81.9% 70.9%
2wglA00 1.10.4190.10 Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF 0.51 42.0 3.40e-01 95.7% 82.8%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 42.0 4.11e-01 93.6% 84.5%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 35.0 2.96e-01 72.3% 71.1%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.50 42.0 4.02e-01 93.6% 91.1%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4993576 5069.1.1.26 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › NrfD 0.69 57.0 4.43e-01 90.4% 73.8%
4011783 633.21.1.25 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF7598 0.65 57.0 4.88e-01 100.0% 69.7%
3703280 5069.1.1.7 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.64 56.0 4.43e-01 100.0% 91.9%
3668980 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.62 55.0 4.94e-01 100.0% 76.3%
5048041 610.2.1.0 alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 0.61 40.0 4.03e-01 95.7% 66.3%
3306743 192.29.1.101 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Rx_N 0.59 45.0 4.01e-01 81.9% 73.3%
3630494 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.59 38.0 3.89e-01 91.5% 67.8%
3776117 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 49.0 4.41e-01 91.5% 68.5%
5032080 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 47.0 4.47e-01 90.4% 73.0%
3839893 1075.1.1.4 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 0.58 43.0 3.28e-01 79.8% 63.0%
3600416 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 49.0 3.69e-01 92.6% 72.4%
3497911 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 50.0 4.47e-01 100.0% 82.2%
3884762 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 47.0 3.98e-01 91.5% 59.4%
5064498 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.56 42.0 3.53e-01 100.0% 44.7%
3713159 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 45.0 4.21e-01 88.3% 78.3%
4563674 192.7.1.4 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.56 38.0 4.36e-01 73.4% 94.3%
3635600 633.6.1.2 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.56 44.0 3.45e-01 86.2% 40.0%
4473674 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 43.0 4.08e-01 81.9% 83.6%
3391109 3684.1.1.21 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › TMEM138 0.55 42.0 3.73e-01 81.9% 67.1%
3298709 605.1.1.141 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Rx_N 0.55 39.0 3.57e-01 74.5% 74.4%
4863348 611.4.1.2 alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like › Acyl-CoA_dh_C 0.55 42.0 3.87e-01 81.9% 98.4%
3690563 150.1.1.81 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › SOG2 0.55 48.0 4.31e-01 100.0% 83.0%
4165971 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.54 41.0 4.08e-01 81.9% 82.0%
3170735 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.54 44.0 3.71e-01 89.4% 98.1%
4501744 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.53 41.0 4.05e-01 81.9% 82.0%
3770253 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 36.0 2.89e-01 72.3% 95.1%
4634395 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.52 38.0 3.75e-01 79.8% 95.2%
3837413 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.51 37.0 3.18e-01 76.6% 90.7%
3722421 604.8.1.0 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.51 43.0 3.77e-01 92.6% 85.7%
4033472 4177.1.1.22 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › LXG 0.51 38.0 2.95e-01 79.8% 80.0%
3712866 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 41.0 3.96e-01 90.4% 93.6%
3287605 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.50 43.0 3.48e-01 100.0% 67.0%
D2 high residues 135-200
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.62 47.0 3.90e-01 84.8% 94.4%
1ofcX01 1.10.1040.30 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › ISWI, HAND domain 0.57 48.0 4.52e-01 98.5% 84.5%
3s95A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 39.0 2.82e-01 100.0% 24.3%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.53 45.0 4.09e-01 98.5% 84.0%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 45.0 3.61e-01 100.0% 54.0%
1ryp100 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 40.0 2.81e-01 84.8% 32.0%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.51 36.0 3.64e-01 83.3% 71.6%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.51 43.0 3.59e-01 98.5% 82.4%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 43.0 3.93e-01 98.5% 78.9%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.50 34.0 2.82e-01 71.2% 43.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4446282 3345.1.1.1 alpha arrays › MRG domain › MRG domain › MRG domain › MRG 0.62 53.0 4.00e-01 100.0% 52.6%
3634796 604.11.1.4 alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › zf-CCCH_6 0.60 46.0 4.43e-01 98.5% 72.5%
3728045 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 2.97e-01 93.9% 28.5%
2722164 4275.1.1.6 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube 0.58 49.0 3.61e-01 100.0% 68.2%
3182786 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 2.88e-01 97.0% 88.4%
4985462 192.2.1.89 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF7121 0.56 42.0 3.00e-01 84.8% 30.0%
3977377 101.1.2.836 alpha arrays › HTH › HTH › winged helix domain › Terminase_5 0.56 47.0 4.14e-01 98.5% 81.9%
3555578 633.22.1.15 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › OST3_OST6 0.56 47.0 4.09e-01 98.5% 91.8%
3857829 2485.1.1.17 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 0.56 47.0 4.08e-01 98.5% 91.8%
4957532 3755.3.1.637 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.55 42.0 3.49e-01 86.4% 54.6%
3896533 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.55 46.0 3.43e-01 95.5% 87.4%
3581098 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.55 45.0 4.00e-01 97.0% 89.5%
3230196 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 3.52e-01 87.9% 65.0%
4075106 604.14.1.1 alpha bundles › Spectrin repeat-like › PPK N-terminal domain-like › PPK N-terminal domain-like › PP_kinase_N 0.52 35.0 3.07e-01 71.2% 41.7%
3797030 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.52 38.0 2.72e-01 78.8% 56.4%