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hypothetical_protein_pqer_cds_707

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_707__YP_009483398__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483398 ↗
Protein ID:
hypothetical_protein_pqer_cds_707
Kingdom:
euk

Quality

73.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-107
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5nx5B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.61 54.0 3.85e-01 100.0% 42.5%
7ktrB01 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.59 39.0 3.51e-01 89.2% 47.0%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 51.0 3.65e-01 100.0% 41.4%
2b6cA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.59 35.0 3.53e-01 81.7% 55.7%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 47.0 4.66e-01 100.0% 85.1%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.57 44.0 4.30e-01 84.9% 82.4%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 49.0 4.73e-01 97.8% 83.3%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 46.0 4.23e-01 88.2% 90.8%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 50.0 3.89e-01 97.8% 58.4%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.56 39.0 4.13e-01 73.1% 86.7%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 48.0 4.13e-01 97.8% 61.0%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 46.0 4.54e-01 100.0% 84.5%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 46.0 4.23e-01 100.0% 69.7%
4uyeA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 45.0 4.35e-01 98.9% 79.8%
6cw0A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 47.0 4.54e-01 100.0% 86.5%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.54 44.0 4.13e-01 90.3% 91.5%
4pklA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 45.0 4.32e-01 100.0% 79.1%
3pivA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 47.0 4.02e-01 100.0% 61.5%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.53 38.0 3.75e-01 76.3% 68.0%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 42.0 4.08e-01 87.1% 82.4%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.53 38.0 3.65e-01 74.2% 96.2%
4nx9A01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.52 43.0 3.65e-01 89.2% 70.3%
4mlmA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 42.0 3.39e-01 89.2% 70.7%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.52 33.0 3.22e-01 91.4% 56.4%
2lmgA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 36.0 3.94e-01 79.6% 91.9%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 38.0 4.13e-01 82.8% 96.0%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.52 41.0 4.19e-01 98.9% 95.3%
5k3hA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 37.0 3.46e-01 90.3% 59.5%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 41.0 3.70e-01 90.3% 75.4%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 39.0 4.15e-01 100.0% 96.3%
1gpjA03 1.10.1200.70 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glutamyl tRNA-reductase dimerization domain 0.50 39.0 4.07e-01 87.1% 91.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244235 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 50.0 4.97e-01 96.8% 92.0%
3697586 603.1.1.5 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.59 47.0 3.93e-01 88.2% 78.2%
2323994 604.37.1.0 ↗ alpha bundles › Spectrin repeat-like › Legionella effector Lem22 › Legionella effector Lem22 0.58 43.0 4.42e-01 81.7% 82.2%
4328718 310.2.1.26 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PigN 0.58 49.0 4.57e-01 100.0% 91.2%
3730522 3924.1.1.0 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.57 49.0 3.98e-01 100.0% 72.6%
3693130 109.3.1.217 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF7791 0.57 49.0 3.70e-01 95.7% 79.6%
3783163 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 43.0 4.60e-01 84.9% 96.2%
4951649 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.55 43.0 3.93e-01 87.1% 83.8%
3525491 5001.1.1.9 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R 0.55 46.0 3.38e-01 100.0% 83.3%
5060063 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.54 36.0 4.11e-01 83.9% 91.4%
4529282 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.54 39.0 4.04e-01 78.5% 93.3%
3923707 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 41.0 4.09e-01 79.6% 91.6%
3896942 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.53 46.0 3.09e-01 98.9% 24.8%
3286659 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.53 35.0 3.88e-01 77.4% 90.0%
3731836 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 44.0 3.45e-01 93.5% 75.7%
3900923 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 40.0 3.91e-01 82.8% 95.0%
3748949 544.1.1.0 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 0.51 46.0 4.37e-01 100.0% 90.8%
4973816 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.51 36.0 3.14e-01 72.0% 72.4%
3510999 611.2.1.1 ↗ alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) › Cbl_N 0.51 37.0 3.37e-01 75.3% 92.0%
4976307 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 41.0 3.26e-01 88.2% 77.9%
D2 high residues 118-209
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 50.0 5.24e-01 97.8% 91.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 49.0 5.10e-01 100.0% 91.7%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 37.0 4.23e-01 100.0% 87.5%
1w53A00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.60 37.0 3.84e-01 83.7% 66.7%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 46.0 4.91e-01 100.0% 97.5%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 49.0 4.22e-01 100.0% 56.4%
1ui6A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 39.0 3.09e-01 94.6% 32.8%
6bmeA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 44.0 4.01e-01 100.0% 62.2%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 37.0 3.99e-01 72.8% 80.3%
3lfuA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 37.0 4.04e-01 100.0% 88.6%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.55 40.0 4.16e-01 100.0% 83.5%
3pivA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 46.0 3.87e-01 97.8% 53.8%
3aq5A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 46.0 4.28e-01 91.3% 92.3%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 40.0 3.58e-01 96.7% 52.9%
2vm6A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.54 38.0 3.28e-01 79.3% 45.8%
3hi0A03 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 48.0 3.76e-01 100.0% 55.2%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 40.0 3.08e-01 79.3% 78.3%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.53 39.0 3.32e-01 76.1% 62.3%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.53 40.0 3.25e-01 83.7% 77.5%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.76e-01 81.5% 79.5%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 39.0 3.51e-01 78.3% 96.0%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.52 36.0 3.82e-01 92.4% 82.7%
4ezbA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 39.0 3.62e-01 81.5% 98.3%
3dewA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 38.0 3.39e-01 81.5% 92.1%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 42.0 3.67e-01 94.6% 92.7%
2c9kA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.50 44.0 3.32e-01 100.0% 49.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037154 4953.1.1.39 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › LPG_synthase_TM 0.69 54.0 5.59e-01 100.0% 89.4%
4953164 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.67 36.0 4.59e-01 95.7% 89.1%
3984343 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.66 49.0 3.79e-01 100.0% 36.0%
5059586 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.64 45.0 4.80e-01 100.0% 87.3%
4032438 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.62 45.0 4.38e-01 100.0% 69.0%
5001173 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.60 43.0 3.84e-01 83.7% 52.3%
3774575 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 37.0 4.10e-01 80.4% 77.3%
3735414 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.59 53.0 4.12e-01 100.0% 73.7%
5078022 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.59 43.0 4.52e-01 100.0% 90.0%
3220832 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.58 41.0 4.21e-01 100.0% 76.7%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.58 38.0 4.15e-01 100.0% 82.7%
4464762 2003.1.2.102 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.58 46.0 3.10e-01 85.9% 48.9%
3297063 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 36.0 3.57e-01 100.0% 60.0%
4627507 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 39.0 4.02e-01 79.3% 80.0%
3656623 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.54 39.0 3.74e-01 100.0% 65.7%
4991188 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.54 41.0 2.81e-01 100.0% 22.1%
5078823 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.54 39.0 2.64e-01 100.0% 19.2%
4959582 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 44.0 3.59e-01 90.2% 92.6%
3961465 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.53 40.0 3.71e-01 81.5% 66.7%
3704289 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.52 40.0 4.25e-01 100.0% 96.2%
4939369 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.52 38.0 3.12e-01 77.2% 65.3%
4944881 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 38.0 3.08e-01 81.5% 95.4%
3517467 6157.1.1.0 ↗ alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 0.51 38.0 3.54e-01 79.3% 79.1%