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hypothetical_protein_pqer_cds_70

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_70__YP_009482761__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009482761 ↗
Protein ID:
hypothetical_protein_pqer_cds_70
Kingdom:
euk

Quality

59.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-104
PDB
Domain cluster: rep: IMGVR_UViG_3300021400_004370-3300021400-Ga0224422_126570053__D12-86
D2 high residues 156-254
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_18__YP_009481628__Pandoravirus_neocaledonia__2107708__D89-187
D3 medium residues 447-513
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.60 47.0 3.69e-01 86.6% 66.0%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 44.0 3.15e-01 80.6% 39.2%
2lw6A00 2.60.320.40 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.58 44.0 4.23e-01 85.1% 73.8%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 43.0 2.68e-01 80.6% 28.9%
3fg1D03 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.09e-01 97.0% 83.7%
3v98A03 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.15e-01 97.0% 81.9%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 46.0 3.80e-01 89.6% 66.9%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 38.0 3.36e-01 70.1% 73.0%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 42.0 4.28e-01 89.6% 82.1%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.55 39.0 3.99e-01 89.6% 77.8%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 44.0 3.73e-01 91.0% 53.4%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.55 43.0 3.54e-01 91.0% 54.7%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 40.0 3.11e-01 77.6% 44.6%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 44.0 3.15e-01 94.0% 42.6%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 39.0 3.15e-01 76.1% 47.4%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.54 47.0 3.19e-01 100.0% 56.2%
3vthA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 43.0 2.91e-01 92.5% 23.3%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.53 43.0 4.28e-01 94.0% 83.1%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 34.0 3.59e-01 91.0% 77.2%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.52e-01 89.6% 52.5%
3hcyA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 44.0 3.52e-01 100.0% 55.9%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 2.97e-01 98.5% 48.6%
7jw6A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 43.0 3.03e-01 94.0% 33.0%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.51 39.0 3.40e-01 83.6% 72.1%
7q5yD01 3.30.70.3270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.23e-01 83.6% 59.5%
2kyyA00 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.50 39.0 3.12e-01 89.6% 52.9%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621625 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 45.0 3.23e-01 74.6% 26.4%
3709607 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 46.0 3.40e-01 77.6% 36.6%
3781870 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.61 42.0 3.89e-01 89.6% 56.5%
3827180 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.59 42.0 3.15e-01 73.1% 51.5%
3940272 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.59 45.0 2.82e-01 83.6% 24.0%
4029394 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.59 44.0 3.17e-01 80.6% 33.3%
3228509 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.59 41.0 3.26e-01 73.1% 62.2%
3608575 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 43.0 3.54e-01 76.1% 62.3%
3489236 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.58 42.0 3.66e-01 77.6% 57.1%
184826 3363.1.1.2 ↗ beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › AvrPiz-t 0.58 44.0 4.23e-01 85.1% 73.8%
2782521 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.57 41.0 4.45e-01 88.1% 90.9%
3953498 4.1.1.439 ↗ beta barrels › SH3 › SH3 › SH3 › PF26205 0.57 41.0 3.97e-01 76.1% 85.3%
4033997 4070.1.1.3 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › DUF3267 0.57 43.0 3.26e-01 80.6% 79.4%
3279083 4.6.1.7 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PF26205 0.56 40.0 3.91e-01 76.1% 85.3%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 39.0 3.57e-01 82.1% 54.4%
3631757 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.56 47.0 2.81e-01 94.0% 59.2%
3281042 601.23.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › PF31110 0.56 43.0 2.88e-01 82.1% 84.9%
5037762 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.56 45.0 3.55e-01 92.5% 67.7%
3213954 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.56 42.0 3.07e-01 82.1% 31.1%
4026237 59.1.1.8 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIF_beta_N 0.55 39.0 3.57e-01 74.6% 82.2%
3627409 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.55 45.0 3.18e-01 88.1% 70.5%
4338598 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.55 40.0 2.98e-01 77.6% 42.9%
3292448 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.55 41.0 2.96e-01 82.1% 37.1%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 41.0 3.39e-01 82.1% 80.8%
3385998 205.1.1.35 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 0.55 41.0 2.96e-01 80.6% 39.5%
5017897 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 42.0 3.32e-01 85.1% 38.7%
3717848 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.55 37.0 2.13e-01 82.1% 6.4%
4191334 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 40.0 3.22e-01 77.6% 46.3%
4939479 206.1.3.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.53 42.0 3.25e-01 85.1% 84.7%
3318217 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.53 47.0 4.41e-01 97.0% 83.7%
3440342 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 34.0 2.99e-01 70.1% 39.1%
3380863 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.52 45.0 2.62e-01 100.0% 49.2%
3932610 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.52 44.0 3.12e-01 94.0% 80.5%
4441223 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.52 43.0 3.41e-01 94.0% 66.7%
4000395 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.52 44.0 3.23e-01 100.0% 51.9%
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.52 45.0 3.02e-01 98.5% 24.6%
4033043 616.1.1.41 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.52 35.0 3.16e-01 82.1% 52.2%
3703231 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.51 37.0 2.88e-01 79.1% 65.5%
2324035 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.51 42.0 2.73e-01 89.6% 58.2%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.51 46.0 3.14e-01 98.5% 35.6%
None — 0.50 42.0 2.96e-01 92.5% 58.1%
3605264 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.50 36.0 2.40e-01 80.6% 23.2%
3793430 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.50 42.0 3.68e-01 89.6% 80.0%
3304098 205.1.1.35 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 0.50 36.0 2.69e-01 76.1% 43.4%
D4 medium residues 514-555_583-643
PDB