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hypothetical_protein_pqer_cds_798

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_798__YP_009483489__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483489 ↗
Protein ID:
hypothetical_protein_pqer_cds_798
Kingdom:
euk

Quality

70.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19206.6 best DUF5878 76.0 3.90e-21 87.8% 44.6%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.79 64.0 4.92e-01 89.2% 40.6%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.76 63.0 6.53e-01 97.3% 100.0%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 64.0 4.89e-01 94.6% 41.6%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.75 62.0 6.33e-01 98.6% 95.8%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.73 49.0 4.47e-01 94.6% 52.6%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.73 64.0 5.93e-01 100.0% 76.6%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.71 45.0 4.72e-01 70.3% 70.6%
2b25A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 57.0 4.25e-01 87.8% 36.3%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.70 52.0 5.24e-01 89.2% 80.0%
2xssA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.68 44.0 3.45e-01 77.0% 32.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.67 55.0 5.21e-01 93.2% 76.1%
1qd1A01 3.30.990.10 Alpha Beta › 2-Layer Sandwich › Formiminotransferase-cyclodeaminase; Chain B, domain 1 › Formiminotransferase, N-terminal subdomain 0.67 58.0 4.40e-01 97.3% 96.7%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 51.0 3.80e-01 83.8% 36.7%
3gu3A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 53.0 4.10e-01 87.8% 38.9%
3g7uA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 56.0 4.25e-01 97.3% 40.4%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.65 53.0 4.92e-01 89.2% 80.0%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 49.0 4.15e-01 89.2% 47.7%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.64 43.0 4.26e-01 73.0% 66.2%
2h4aA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 52.0 4.22e-01 90.5% 52.5%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.63 46.0 3.93e-01 75.7% 85.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 51.0 4.80e-01 94.6% 73.4%
1sfuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 5.04e-01 100.0% 94.3%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 43.0 4.18e-01 82.4% 66.3%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.60 47.0 4.37e-01 87.8% 66.0%
2qmxA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 44.0 4.23e-01 83.8% 67.8%
2ewhA01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.59 42.0 4.10e-01 75.7% 75.3%
2cw8A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 52.0 4.03e-01 100.0% 51.5%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 52.0 3.86e-01 98.6% 40.3%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.59 43.0 4.16e-01 82.4% 69.0%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 43.0 4.32e-01 93.2% 78.4%
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 42.0 2.92e-01 75.7% 47.6%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 51.0 3.85e-01 100.0% 95.2%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 37.0 3.79e-01 78.4% 67.1%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 49.0 3.87e-01 97.3% 83.9%
2qmwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 43.0 4.06e-01 83.8% 66.7%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.57 44.0 4.47e-01 83.8% 94.4%
2j0wA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 41.0 4.07e-01 82.4% 71.6%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.56 42.0 3.32e-01 82.4% 80.6%
1vkwA02 3.40.109.30 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › putative nitroreductase (tm1586), domain 2 0.55 48.0 4.47e-01 100.0% 100.0%
2dchX01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 47.0 4.43e-01 95.9% 78.5%
3wy7D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 39.0 3.41e-01 77.0% 48.3%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 46.0 3.40e-01 94.6% 45.8%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 3.71e-01 77.0% 67.8%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 38.0 3.26e-01 75.7% 75.8%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.54 47.0 3.59e-01 100.0% 98.9%
2clqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.92e-01 82.4% 75.3%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 40.0 3.26e-01 82.4% 81.5%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.52 43.0 3.30e-01 91.9% 55.6%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.78e-01 97.3% 66.3%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 42.0 3.67e-01 93.2% 91.5%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.71e-01 97.3% 68.8%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992039 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.82 73.0 6.75e-01 100.0% 76.6%
3639962 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.79 69.0 6.62e-01 97.3% 90.6%
4027999 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.78 62.0 5.97e-01 97.3% 75.3%
3657448 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.75 68.0 5.45e-01 100.0% 55.7%
3236950 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.75 60.0 6.13e-01 95.9% 92.9%
3743748 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 57.0 5.41e-01 89.2% 68.9%
3478525 320.1.1.7 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.74 61.0 6.08e-01 90.5% 89.3%
3415465 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 61.0 5.87e-01 93.2% 81.2%
3478956 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.73 65.0 4.85e-01 100.0% 53.4%
3482830 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.73 65.0 4.12e-01 100.0% 32.5%
3611404 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 60.0 5.56e-01 90.5% 90.5%
3898070 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 59.0 6.09e-01 90.5% 100.0%
4248896 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 56.0 5.88e-01 89.2% 98.5%
4024901 328.3.1.0 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.71 60.0 5.77e-01 93.2% 82.4%
3740540 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 58.0 5.72e-01 95.9% 85.0%
3351908 320.1.1.7 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.70 58.0 5.65e-01 90.5% 93.8%
3578925 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 61.0 5.43e-01 100.0% 68.6%
3716821 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 56.0 5.64e-01 90.5% 96.0%
3423643 246.3.1.2 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › RNase_E_G 0.68 58.0 4.95e-01 98.6% 61.6%
4930625 2.1.1.95 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C 0.67 47.0 3.80e-01 73.0% 84.4%
3333834 328.4.1.1 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.67 56.0 4.75e-01 94.6% 82.4%
3312923 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 48.0 4.47e-01 78.4% 60.0%
3815033 207.1.1.47 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_6 0.66 53.0 3.35e-01 98.6% 16.1%
4522815 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.66 48.0 4.48e-01 78.4% 63.2%
4952469 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.29e-01 95.9% 78.9%
1211839 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.65 52.0 4.79e-01 86.5% 79.2%
4771543 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.63 51.0 5.34e-01 97.3% 100.0%
5027648 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 51.0 4.89e-01 89.2% 78.8%
3354180 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.62 53.0 4.74e-01 98.6% 91.8%
None — 0.62 47.0 3.03e-01 85.1% 25.2%
5082791 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.62 53.0 4.05e-01 95.9% 45.1%
None — 0.62 47.0 3.00e-01 85.1% 24.1%
4168199 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 48.0 4.56e-01 86.5% 75.6%
5066741 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.59 42.0 4.05e-01 78.4% 65.9%
4473492 304.11.1.2 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.58 40.0 3.85e-01 71.6% 67.1%
4965406 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.57 40.0 3.98e-01 74.3% 70.0%
4940919 304.102.1.2 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.57 46.0 3.43e-01 91.9% 87.4%
3670277 3012.1.1.1 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.57 44.0 4.39e-01 83.8% 90.7%
3588048 304.156.1.0 ↗ a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain 0.56 46.0 4.16e-01 93.2% 84.8%
4021510 320.4.1.0 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain 0.55 47.0 3.94e-01 100.0% 70.7%
3387142 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 39.0 2.96e-01 82.4% 30.0%
3466526 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 36.0 3.75e-01 71.6% 78.1%
5037249 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.54 44.0 4.26e-01 100.0% 81.2%
5057506 304.3.1.11 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE 0.53 44.0 4.15e-01 100.0% 79.6%
3669878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 4.20e-01 100.0% 84.4%
3609798 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 46.0 3.99e-01 100.0% 86.1%
D2 high residues 78-173
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_588__YP_009481272__Pandoravirus_macleodensis__2107707__D132-206
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19206.6 best DUF5878 91.3 7.30e-26 82.3% 53.4%