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hypothetical_protein_pqer_cds_827

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_827__YP_009483518__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483518 ↗
Protein ID:
hypothetical_protein_pqer_cds_827
Kingdom:
euk

Quality

84.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 88-173
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5h28A01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 59.0 5.01e-01 96.5% 86.9%
7ru9C01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 58.0 4.13e-01 100.0% 47.6%
2b1eA04 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.65 49.0 4.31e-01 80.2% 85.0%
8hk0A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.62 46.0 4.24e-01 81.4% 86.6%
1axdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 4.41e-01 91.9% 90.2%
1qqeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 3.67e-01 100.0% 43.8%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 47.0 4.22e-01 97.7% 96.0%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 46.0 4.08e-01 95.3% 92.1%
2zcxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 45.0 3.52e-01 96.5% 60.0%
3mg2B01 1.10.2090.10 Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain 0.53 38.0 3.20e-01 75.6% 64.6%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 39.0 3.16e-01 77.9% 62.2%
1q0sA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.52 34.0 3.36e-01 79.1% 60.0%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.52 44.0 3.74e-01 97.7% 94.2%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.52 38.0 3.53e-01 79.1% 75.4%
2hr2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 3.67e-01 100.0% 91.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 44.0 4.15e-01 95.3% 90.3%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 43.0 4.17e-01 95.3% 90.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3195802 109.3.1.186 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_5 0.80 63.0 4.41e-01 97.7% 27.7%
3808367 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.72 64.0 5.54e-01 97.7% 65.4%
3668829 109.4.1.1277 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.70 63.0 4.46e-01 100.0% 36.2%
3256457 109.58.1.4 ↗ alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › PF28996 0.69 63.0 4.89e-01 100.0% 55.7%
3351897 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.68 60.0 3.75e-01 100.0% 26.3%
3647697 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.67 60.0 4.98e-01 100.0% 63.9%
3821798 109.4.1.1424 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, TPR_24 0.66 57.0 4.86e-01 97.7% 58.6%
3520593 109.4.1.80 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.66 57.0 4.09e-01 100.0% 50.2%
3667947 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.66 58.0 4.97e-01 100.0% 84.3%
3817815 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.65 56.0 4.50e-01 98.8% 48.9%
3368791 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.65 55.0 5.19e-01 97.7% 78.1%
3827199 109.4.1.1295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.64 56.0 4.54e-01 100.0% 57.1%
3341939 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.64 54.0 5.13e-01 97.7% 78.1%
3648617 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.63 55.0 4.27e-01 100.0% 45.5%
3832422 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.63 54.0 5.03e-01 98.8% 75.2%
3370248 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.63 55.0 3.55e-01 100.0% 29.2%
3644063 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.61 53.0 4.95e-01 100.0% 78.2%
3669281 109.4.1.1336 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3 0.61 52.0 4.80e-01 98.8% 78.8%
3466740 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.61 52.0 4.53e-01 98.8% 82.9%
3360215 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.60 53.0 4.12e-01 100.0% 60.8%
3360250 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.60 51.0 4.48e-01 100.0% 64.3%
3679901 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 4.69e-01 97.7% 76.2%
3312487 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.59 47.0 4.48e-01 88.4% 73.3%
3661572 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 50.0 4.62e-01 100.0% 74.8%
3737877 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 4.06e-01 98.8% 62.4%
3803665 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 49.0 4.70e-01 97.7% 82.0%
3658649 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 50.0 4.59e-01 98.8% 77.4%
5044432 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.57 46.0 4.00e-01 90.7% 83.6%
3432350 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 44.0 3.37e-01 88.4% 69.5%
3342479 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.56 48.0 4.38e-01 100.0% 95.0%
4123082 109.4.1.253 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RapH_N 0.55 47.0 3.21e-01 100.0% 45.6%
D2 medium residues 174-230
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1675__YP_009120644__Pandoravirus_inopinatum__1605721__D292-355
D3 medium residues 368-493
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_895__YP_009430090__Pandoravirus_salinus__1349410__D409-493