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hypothetical_protein_pqer_cds_904

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_904__YP_009483595__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483595 ↗
Protein ID:
hypothetical_protein_pqer_cds_904
Kingdom:
euk

Quality

70.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-164
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_1104__YP_009483795__Pandoravirus_quercus__2107709__D75-181
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 29.0 3.68e-01 87.6% 74.6%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 33.0 2.81e-01 89.4% 33.5%
4dixA02 2.30.29.140 Mainly Beta › Roll › PH-domain like › 0.56 41.0 3.97e-01 92.0% 68.8%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 33.0 3.90e-01 96.5% 87.8%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 42.0 3.64e-01 79.6% 86.0%
1vwxk00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 30.0 3.61e-01 88.5% 88.4%
1yt3A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 33.0 2.84e-01 88.5% 36.6%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 21.0 2.83e-01 80.5% 70.9%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 30.0 3.56e-01 97.3% 89.2%
7jw6A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 35.0 2.88e-01 92.0% 37.2%
3pqhA01 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.50 19.0 2.50e-01 90.3% 58.3%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 26.0 3.36e-01 92.0% 93.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3787887 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.61 35.0 4.27e-01 88.5% 89.0%
3286642 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 4.51e-01 78.8% 89.1%
3899773 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 45.0 3.63e-01 83.2% 77.1%
3273237 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.57 41.0 3.97e-01 92.0% 67.2%
4192693 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 39.0 4.32e-01 86.7% 94.1%
4929722 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 44.0 3.68e-01 82.3% 83.8%
5065093 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 43.0 3.67e-01 82.3% 85.9%
3400709 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 36.0 2.84e-01 90.3% 31.4%
3268983 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 41.0 4.10e-01 91.2% 79.1%
3240491 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.62e-01 90.3% 63.0%
3946213 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 43.0 3.95e-01 89.4% 80.0%
4584002 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.52 39.0 4.09e-01 91.2% 87.6%
3938769 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.50e-01 91.2% 54.3%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.56e-01 79.6% 79.3%
D2 medium residues 183-396
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_184__YP_009481794__Pandoravirus_neocaledonia__2107708__D369-571
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qhpA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.63 49.0 4.30e-01 97.2% 53.8%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 47.0 5.02e-01 94.4% 89.6%
4gywA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 32.0 4.33e-01 72.0% 100.0%
4gyoA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 42.0 4.21e-01 86.0% 69.5%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 37.0 4.40e-01 77.6% 93.6%
4abnA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 40.0 3.72e-01 78.5% 53.8%
3jq0A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 43.0 3.33e-01 78.0% 75.3%
1upkA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 51.0 4.50e-01 100.0% 71.9%
3tt9A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 51.0 4.98e-01 100.0% 95.3%
4m7cB00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.56 38.0 4.01e-01 79.9% 75.3%
7cc7A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 41.0 4.10e-01 84.1% 73.3%
1qsaA01 1.25.20.10 Mainly Alpha › Alpha Horseshoe › 70-kda Soluble Lytic Transglycosylase; domain 1 › Bacterial muramidases 0.55 47.0 3.93e-01 99.1% 53.7%
2xpiD00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 42.0 3.25e-01 99.5% 33.6%
3bqoA00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.55 38.0 3.92e-01 79.9% 73.8%
6whbA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 48.0 4.46e-01 96.3% 87.4%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 49.0 4.43e-01 100.0% 72.7%
4nq0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 4.14e-01 86.4% 93.3%
7fhyB01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.52 47.0 4.25e-01 96.7% 91.8%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 3.82e-01 99.1% 64.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023091 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.70 50.0 4.28e-01 74.8% 46.9%
3649982 109.4.1.636 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_HEAT 0.61 44.0 4.68e-01 81.3% 83.8%
3622285 109.4.1.111 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUL 0.60 56.0 5.04e-01 100.0% 81.7%
3940971 109.4.1.1367 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26723 0.59 54.0 3.92e-01 100.0% 71.5%
3788741 109.4.1.58 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 0.58 51.0 4.68e-01 93.9% 80.0%
3261874 109.4.1.3299 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39, TPR_6 0.58 39.0 3.57e-01 85.0% 51.1%
3472576 109.4.1.1504 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26103 0.57 52.0 3.91e-01 99.5% 60.7%
3657285 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.57 43.0 4.17e-01 98.1% 69.2%
3615066 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 51.0 4.75e-01 99.1% 81.5%
3332480 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 45.0 3.97e-01 100.0% 56.8%
3788572 109.4.1.1323 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IMB1 0.56 52.0 4.72e-01 100.0% 85.3%
3331044 109.4.1.1155 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_At3g06530 0.56 51.0 4.73e-01 99.5% 90.2%
3723833 109.4.1.73 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Uso1_p115_head 0.56 51.0 3.59e-01 100.0% 34.8%
3724275 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.55 51.0 3.84e-01 100.0% 43.5%
3178009 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 50.0 4.66e-01 99.1% 99.6%
4680149 109.4.1.2401 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29070, PF30136 0.54 44.0 4.02e-01 99.1% 63.9%
3714519 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.54 44.0 3.43e-01 86.0% 61.0%
3607722 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 43.0 3.87e-01 82.7% 75.2%
3262226 109.4.1.295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt 0.54 45.0 4.18e-01 100.0% 69.1%
3665738 109.4.1.630 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_TTP_bind,CNOT1_HEAT 0.53 49.0 4.06e-01 100.0% 78.9%
3333370 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 44.0 4.30e-01 95.3% 82.6%
3585769 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 4.19e-01 98.6% 85.6%
3522929 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 46.0 4.36e-01 98.6% 89.6%
3717950 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 4.37e-01 87.9% 97.9%
4240431 109.4.1.509 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.51 45.0 4.50e-01 98.6% 91.1%
3316847 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 37.0 3.65e-01 75.2% 98.7%