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hypothetical_protein_pqer_cds_957

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_957__YP_009483648__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483648 ↗
Protein ID:
hypothetical_protein_pqer_cds_957
Kingdom:
euk

Quality

52.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-101
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.67 45.0 4.42e-01 70.5% 75.6%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 43.0 4.44e-01 88.5% 70.3%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.65 40.0 4.07e-01 89.7% 62.8%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.61 43.0 3.79e-01 89.7% 51.8%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 51.0 4.04e-01 98.7% 70.5%
4o6kA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 47.0 3.92e-01 85.9% 66.9%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 47.0 4.20e-01 88.5% 61.5%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 40.0 3.98e-01 70.5% 85.4%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 47.0 4.39e-01 87.2% 72.4%
4oo2A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 53.0 3.88e-01 100.0% 79.6%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 40.0 4.03e-01 70.5% 69.6%
3czhA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 48.0 3.09e-01 97.4% 73.8%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.57 49.0 3.28e-01 100.0% 27.0%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 46.0 4.26e-01 88.5% 73.5%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.57 46.0 4.31e-01 88.5% 72.2%
2l6hA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 44.0 3.52e-01 85.9% 69.5%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.55 46.0 3.80e-01 88.5% 72.2%
4ga0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 36.0 2.91e-01 94.9% 35.7%
1whuA00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.55 40.0 3.67e-01 78.2% 91.3%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 47.0 4.38e-01 100.0% 85.4%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 38.0 3.31e-01 79.5% 48.8%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 44.0 3.92e-01 89.7% 67.9%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 45.0 4.05e-01 93.6% 69.7%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 41.0 3.17e-01 85.9% 63.2%
6axfA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.52 44.0 3.83e-01 92.3% 84.6%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 43.0 3.75e-01 89.7% 69.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 51.0 5.64e-01 93.6% 75.4%
3221696 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.78 55.0 3.42e-01 73.1% 34.7%
3468667 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.78 56.0 3.71e-01 74.4% 57.0%
3419446 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 41.0 4.31e-01 98.7% 57.1%
None — 0.76 55.0 3.19e-01 74.4% 28.9%
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 52.0 5.71e-01 92.3% 84.6%
3287280 150.8.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.75 40.0 2.93e-01 71.8% 21.6%
3687689 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.75 51.0 3.29e-01 70.5% 38.5%
None — 0.74 52.0 3.30e-01 74.4% 46.1%
None — 0.72 53.0 3.27e-01 78.2% 48.6%
3694013 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 44.0 4.07e-01 100.0% 49.0%
3816173 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 54.0 3.32e-01 83.3% 43.8%
3243299 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 46.0 4.86e-01 88.5% 77.1%
4017103 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.67 53.0 3.39e-01 84.6% 95.6%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.67 50.0 3.69e-01 78.2% 94.2%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.65 52.0 3.14e-01 87.2% 99.1%
4011424 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.65 58.0 5.50e-01 94.9% 98.9%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 48.0 4.66e-01 100.0% 71.8%
4029863 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.63 42.0 3.82e-01 70.5% 81.8%
3967398 3755.1.1.1 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO 0.62 42.0 3.38e-01 70.5% 36.7%
3279027 150.8.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE 0.61 42.0 3.19e-01 70.5% 33.1%
3619662 192.12.1.3 ↗ alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 0.61 47.0 4.73e-01 82.1% 88.7%
3624439 611.4.1.0 ↗ alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like 0.61 54.0 4.16e-01 97.4% 89.9%
3735929 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 53.0 5.46e-01 97.4% 97.3%
3705783 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.59 47.0 4.50e-01 84.6% 77.8%
4946483 133.2.1.1 ↗ alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like › FTCD_C 0.59 51.0 3.92e-01 97.4% 76.8%
4026286 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 48.0 4.03e-01 89.7% 77.8%
3218199 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.58 45.0 4.32e-01 82.1% 74.4%
3605626 192.12.1.0 ↗ alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM 0.58 46.0 4.16e-01 84.6% 71.4%
3187719 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.57 42.0 4.33e-01 100.0% 81.3%
3195070 109.4.1.128 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 0.57 47.0 3.17e-01 92.3% 40.1%
3218641 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 46.0 3.97e-01 87.2% 70.8%
3756798 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.57 43.0 3.79e-01 83.3% 70.0%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.55 46.0 4.66e-01 98.7% 88.5%
3530378 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 45.0 3.61e-01 88.5% 58.1%
3236656 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.54 48.0 4.00e-01 100.0% 70.7%
1503721 632.22.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.54 39.0 3.52e-01 76.9% 64.9%
3282651 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 41.0 2.48e-01 80.8% 20.6%
3729172 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.53 47.0 4.19e-01 97.4% 85.5%
3940232 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 41.0 3.79e-01 87.2% 81.0%
4929584 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.52 43.0 3.58e-01 94.9% 53.1%
1248638 603.3.1.1 ↗ alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein › APP_E2 0.51 43.0 3.82e-01 92.3% 64.5%
3437971 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.50 46.0 4.40e-01 98.7% 97.8%
D2 high residues 249-386
PDB
D3 medium residues 102-193
PDB