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hypothetical_protein_psal_cds_1063

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_1063__YP_008438344__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438344 ↗
Protein ID:
hypothetical_protein_psal_cds_1063
Kingdom:
euk

Quality

70.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-174
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_359__YP_009481043__Pandoravirus_macleodensis__2107707__D58-179
D2 high residues 190-373
PDB
D3 high residues 392-486
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_529__YP_009482139__Pandoravirus_neocaledonia__2107708__D177-292
D4 high residues 493-559
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_436__YP_009481120__Pandoravirus_macleodensis__2107707__D494-546
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 46.0 4.08e-01 80.6% 85.3%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.61 48.0 3.52e-01 88.1% 47.2%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.61 45.0 3.71e-01 82.1% 77.2%
3hgkE00 1.20.1280.110 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.60 51.0 4.99e-01 100.0% 93.5%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 39.0 3.23e-01 70.1% 49.6%
2hsnA02 1.20.1050.110 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 42.0 3.75e-01 82.1% 64.5%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.57 40.0 3.21e-01 74.6% 59.0%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 43.0 3.37e-01 83.6% 57.8%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.56 41.0 3.85e-01 80.6% 77.0%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 39.0 3.19e-01 74.6% 84.4%
4hojA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 39.0 3.50e-01 76.1% 78.6%
3zheB02 1.20.190.60 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.55 40.0 2.99e-01 79.1% 53.0%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 44.0 3.76e-01 91.0% 95.6%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.92e-01 91.0% 97.8%
4zi3D00 1.20.1520.10 Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain 0.53 43.0 3.68e-01 98.5% 78.9%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 40.0 3.44e-01 85.1% 80.2%
3ihmA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 35.0 2.58e-01 71.6% 46.0%
1yy7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 35.0 3.15e-01 71.6% 69.5%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 36.0 3.09e-01 77.6% 43.8%
2q9rA01 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.52 43.0 3.23e-01 100.0% 81.5%
2lzfA00 1.10.287.3030 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 39.0 3.90e-01 100.0% 82.4%
4uhcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 42.0 2.93e-01 100.0% 45.0%
2j9qB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 40.0 2.78e-01 91.0% 60.6%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.51 32.0 3.30e-01 85.1% 68.9%
8ai9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 36.0 3.27e-01 80.6% 54.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3862880 1016.1.1.0 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 0.73 50.0 4.62e-01 71.6% 82.4%
3178113 604.5.1.68 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TMEM33_Pom33 0.59 41.0 3.05e-01 73.1% 60.6%
4099504 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.58 40.0 4.20e-01 74.6% 95.0%
4257134 192.5.1.35 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Hobbit 0.57 34.0 3.02e-01 88.1% 40.0%
5038910 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.56 42.0 2.87e-01 82.1% 40.4%
3294931 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 40.0 2.81e-01 77.6% 38.3%
3320708 610.2.1.1 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical 0.56 43.0 3.69e-01 88.1% 79.2%
4997392 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.56 42.0 3.45e-01 85.1% 87.1%
4972573 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 41.0 2.61e-01 80.6% 42.9%
4973336 4163.1.1.4 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › PF27418 0.55 37.0 3.22e-01 70.1% 59.1%
4029361 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.55 42.0 3.55e-01 88.1% 64.8%
3685074 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.54 40.0 4.20e-01 98.5% 88.3%
3981167 4995.1.1.3 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › MlrA_helical 0.53 36.0 3.48e-01 70.1% 84.0%
3272971 4299.1.1.1 ↗ alpha arrays › BSD domain › BSD domain › BSD domain › BSD 0.51 43.0 4.08e-01 95.5% 90.4%
3666014 632.7.1.45 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF30850 0.50 35.0 3.18e-01 71.6% 57.8%
5065203 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.50 42.0 2.93e-01 100.0% 53.3%