←Back to structures

hypothetical_protein_psal_cds_1081

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_1081__YP_008438371__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438371 ↗
Protein ID:
hypothetical_protein_psal_cds_1081
Kingdom:
euk

Quality

75.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 158-324
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1591__YP_009120560__Pandoravirus_inopinatum__1605721__D181-198_210-259_277-315_339-420
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tdeA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 35.0 3.73e-01 99.4% 61.1%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.58 34.0 3.61e-01 99.4% 63.3%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.57 31.0 3.67e-01 95.2% 75.4%
7tn8A01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 30.0 2.98e-01 86.2% 50.0%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.52 25.0 2.90e-01 100.0% 58.9%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 29.0 3.35e-01 73.7% 75.9%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 33.0 2.91e-01 100.0% 44.1%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 3.61e-01 99.4% 76.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3335487 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 36.0 3.70e-01 72.5% 91.9%
D2 high residues 494-609
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_228__YP_008436829__Pandoravirus_salinus__1349410__D350-478
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oogC01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.63 44.0 3.92e-01 71.6% 96.9%
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.61 42.0 4.31e-01 70.7% 87.4%
1u7gA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.61 54.0 3.80e-01 100.0% 66.6%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 38.0 4.36e-01 71.6% 94.0%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 39.0 3.66e-01 70.7% 89.3%
2igsA00 1.10.3690.10 Mainly Alpha › Orthogonal Bundle › PA2222-like fold › PA2222-like domain 0.57 44.0 3.66e-01 81.9% 78.5%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.56 39.0 4.00e-01 71.6% 100.0%
4omhB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 41.0 3.10e-01 81.9% 39.4%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 36.0 3.91e-01 79.3% 85.1%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.52 34.0 3.84e-01 70.7% 84.4%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 40.0 3.85e-01 82.8% 97.0%
2mgyA01 1.20.1260.100 Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein 0.51 38.0 3.45e-01 77.6% 86.3%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 38.0 3.72e-01 79.3% 82.3%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.51 39.0 3.57e-01 95.7% 59.4%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 38.0 3.85e-01 79.3% 97.4%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.50 41.0 3.78e-01 88.8% 89.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3394467 142.3.1.0 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.73 53.0 5.97e-01 74.1% 95.6%
4080311 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.57 48.0 4.63e-01 89.7% 92.2%
3202893 109.3.1.148 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Goodbye 0.57 49.0 4.16e-01 94.8% 76.9%
4941549 148.1.3.29 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › LonB_AAA-LID 0.56 41.0 4.13e-01 75.9% 85.2%
None — 0.55 49.0 3.60e-01 100.0% 89.4%
3452617 5059.1.1.24 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PUNUT 0.54 43.0 3.16e-01 85.3% 62.4%
5014987 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 43.0 3.39e-01 87.9% 87.0%
4994772 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 42.0 3.25e-01 85.3% 63.5%
3236503 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.54 42.0 3.03e-01 84.5% 59.4%
4971390 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 48.0 3.63e-01 99.1% 96.8%
3308836 5059.1.1.34 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp 0.53 47.0 3.52e-01 100.0% 94.9%
3735864 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.53 47.0 3.35e-01 100.0% 91.9%
3723892 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.53 42.0 3.23e-01 87.1% 62.8%
3703885 5059.1.1.34 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp 0.53 42.0 3.12e-01 85.3% 59.4%
4022479 5059.1.1.6 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › CSG2 0.53 42.0 2.96e-01 85.3% 53.9%
3709613 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.53 42.0 3.14e-01 87.1% 63.1%
3600374 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.53 46.0 3.49e-01 100.0% 88.9%
3342271 5059.1.1.34 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp 0.52 45.0 3.46e-01 100.0% 95.4%
3689469 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.52 41.0 3.00e-01 86.2% 53.8%
3964803 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 41.0 3.19e-01 87.1% 61.4%
3962689 141.1.1.8 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.52 40.0 3.20e-01 81.9% 58.0%
3261964 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.52 40.0 3.00e-01 81.9% 53.5%
4023917 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.52 41.0 3.10e-01 87.1% 58.8%
3283218 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 43.0 3.42e-01 93.1% 93.6%
4223064 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.52 46.0 3.29e-01 100.0% 93.7%
3626980 5059.1.1.34 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp 0.52 39.0 2.96e-01 82.8% 59.4%
3665854 5059.1.1.16 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › SLC35F 0.52 40.0 2.99e-01 85.3% 58.8%
3590722 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.52 37.0 3.79e-01 79.3% 77.3%
4030969 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 41.0 3.16e-01 87.1% 64.1%
3170301 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.51 40.0 2.99e-01 85.3% 66.4%
3381284 5059.1.1.33 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, SLC35F 0.51 40.0 3.00e-01 85.3% 60.3%
3483395 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.51 44.0 3.19e-01 100.0% 98.9%
3393571 5059.1.1.4 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.51 39.0 2.99e-01 85.3% 60.6%
5034492 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.50 42.0 3.26e-01 94.8% 94.8%
4025084 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.50 43.0 3.32e-01 100.0% 97.4%
3819669 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.50 40.0 2.99e-01 87.1% 61.6%
3813149 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.50 41.0 3.08e-01 90.5% 60.0%
3228505 5059.1.1.34 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp 0.50 39.0 2.93e-01 84.5% 59.4%
D3 medium residues 3-125
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e7qA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 38.0 3.20e-01 93.5% 45.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3407576 603.1.1.101 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_6 0.52 44.0 3.15e-01 91.9% 85.1%
D4 medium residues 385-483
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_529__YP_009482139__Pandoravirus_neocaledonia__2107708__D177-292