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hypothetical_protein_psal_cds_1082
Euk-VirPandoravirus_salinus
hypothetical_protein_psal_cds_1082__YP_008438372__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008438372 ↗
- Protein ID:
- hypothetical_protein_psal_cds_1082
- Kingdom:
- euk
Quality
63.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-149
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19166.7 best | DUF5848 | 72.8 | 2.70e-20 | 49.6% | 100.0% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 24.0 | 2.82e-01 | 92.7% | 61.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592972 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 34.0 | 2.94e-01 | 86.2% | 37.9% |
| 3830231 | 1075.1.1.6 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_7 | 0.52 | 40.0 | 3.31e-01 | 82.1% | 67.4% |
| 3473769 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.50 | 35.0 | 2.81e-01 | 72.4% | 87.5% |
D2
high
residues 192-323
D3
high
residues 328-439
Domain cluster:
rep: hypothetical_protein_pneo_cds_529__YP_009482139__Pandoravirus_neocaledonia__2107708__D177-292
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 52.0 | 3.87e-01 | 100.0% | 88.7% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.58 | 49.0 | 4.12e-01 | 93.8% | 84.1% |
| 3u66A00 | 1.25.40.590 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU | 0.57 | 42.0 | 3.67e-01 | 75.9% | 88.1% |
| 3c2bA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 39.0 | 3.58e-01 | 71.4% | 93.2% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.56 | 46.0 | 4.13e-01 | 90.2% | 81.2% |
| 3pmmA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.55 | 45.0 | 3.16e-01 | 89.3% | 77.4% |
| 4zudA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 49.0 | 3.79e-01 | 100.0% | 99.2% |
| 4akgA02 | 1.20.140.100 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain | 0.54 | 40.0 | 3.50e-01 | 100.0% | 51.8% |
| 5cmyA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 40.0 | 3.73e-01 | 79.5% | 86.6% |
| 2yvkA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.53 | 43.0 | 4.01e-01 | 90.2% | 83.1% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 35.0 | 3.48e-01 | 98.2% | 64.4% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.52 | 36.0 | 3.65e-01 | 100.0% | 70.5% |
| 8h72B01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 44.0 | 3.31e-01 | 98.2% | 82.0% |
| 2bb5A01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 41.0 | 3.04e-01 | 88.4% | 78.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3250413 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 45.0 | 3.75e-01 | 72.3% | 70.5% |
| 3259758 | 109.4.1.454 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_GBD | 0.60 | 42.0 | 3.03e-01 | 70.5% | 48.1% |
| 3781008 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 41.0 | 3.50e-01 | 71.4% | 85.4% |
| 3584361 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 42.0 | 3.46e-01 | 75.0% | 74.8% |
| 3254275 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 41.0 | 3.59e-01 | 75.0% | 74.1% |
| 3619582 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 41.0 | 3.18e-01 | 77.7% | 50.2% |
| 3677809 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.55 | 38.0 | 3.57e-01 | 71.4% | 95.9% |
| 3736267 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 44.0 | 3.18e-01 | 86.6% | 45.9% |
| 3374315 | 603.1.1.192 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › COG7 | 0.55 | 39.0 | 3.54e-01 | 73.2% | 61.4% |
| 3645720 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.54 | 37.0 | 3.41e-01 | 70.5% | 87.3% |
| 4393414 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.53 | 36.0 | 3.48e-01 | 95.5% | 62.1% |
| 3628084 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.52 | 37.0 | 3.30e-01 | 74.1% | 72.9% |
| 4015471 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 3.95e-01 | 79.5% | 89.5% |
| 3621548 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.52 | 46.0 | 3.77e-01 | 100.0% | 78.1% |
| 3222099 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 3.51e-01 | 78.6% | 68.4% |
| 3721771 | 3924.1.1.0 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 | 0.50 | 39.0 | 3.38e-01 | 83.9% | 80.0% |
| 3524768 | 109.4.1.562 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CANIN | 0.50 | 42.0 | 2.89e-01 | 92.0% | 60.3% |