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hypothetical_protein_psal_cds_1123

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_1123__YP_008438438__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438438 ↗
Protein ID:
hypothetical_protein_psal_cds_1123
Kingdom:
euk

Quality

70.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-60
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.70 55.0 4.42e-01 86.0% 96.4%
4gx0B03 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.68 45.0 4.11e-01 100.0% 51.3%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.67 48.0 4.25e-01 75.4% 93.9%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.66 46.0 4.07e-01 75.4% 96.6%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.66 57.0 4.32e-01 100.0% 43.9%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 46.0 4.19e-01 82.5% 88.6%
4rdrA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.60 47.0 3.81e-01 91.2% 72.6%
3jxoA00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.60 40.0 3.57e-01 100.0% 46.4%
2qntA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 35.0 2.77e-01 98.2% 29.3%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 37.0 3.72e-01 100.0% 67.9%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 4.03e-01 96.5% 73.1%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.55 43.0 3.98e-01 91.2% 94.9%
7q6gA01 3.30.1490.110 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.53 42.0 3.85e-01 100.0% 64.9%
7solA02 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.52 45.0 3.76e-01 100.0% 56.3%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.17e-01 86.0% 87.9%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.50 38.0 3.07e-01 89.5% 79.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065644 2006.1.1.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.69 44.0 3.18e-01 75.4% 23.3%
4054513 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 52.0 4.29e-01 86.0% 98.2%
3592465 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 45.0 2.79e-01 73.7% 94.2%
3231961 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.50e-01 96.5% 86.3%
3781717 2006.1.1.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.62 39.0 2.76e-01 98.2% 21.2%
4146498 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.60 47.0 4.03e-01 89.5% 78.0%
3858984 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.60 43.0 2.97e-01 77.2% 69.2%
3672356 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.56 40.0 2.47e-01 77.2% 66.7%
3724501 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.55 46.0 3.46e-01 98.2% 65.8%
4033296 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.55 37.0 3.16e-01 71.9% 81.1%
4990951 3535.1.1.0 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.54 42.0 3.21e-01 86.0% 41.5%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.52 41.0 3.98e-01 96.5% 80.0%
3450701 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.52 45.0 2.73e-01 100.0% 67.9%
4012275 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.52 40.0 3.15e-01 91.2% 63.4%
5012859 11.1.1.33 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.51 40.0 3.03e-01 89.5% 53.3%
3609512 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 3.07e-01 91.2% 71.7%
4030292 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 2.42e-01 75.4% 43.2%
3518051 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.51 40.0 2.76e-01 86.0% 39.5%