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hypothetical_protein_psal_cds_1128

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_1128__YP_008438445__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438445 ↗
Protein ID:
hypothetical_protein_psal_cds_1128
Kingdom:
euk

Quality

76.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-76_271-382
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF19207.6 best DUF5879 81.1 1.30e-22 33.3% 19.8%
PF19207.6 DUF5879 35.6 9.90e-09 17.6% 10.3%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.80 32.0 5.20e-01 73.9% 98.4%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.68 36.0 3.50e-01 80.6% 44.7%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 32.0 4.74e-01 75.2% 100.0%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 33.0 3.07e-01 78.2% 37.4%
2d1lA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 36.0 3.10e-01 80.6% 36.5%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.63 30.0 4.25e-01 83.0% 96.2%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.62 33.0 3.12e-01 78.2% 42.0%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.62 38.0 3.77e-01 90.3% 57.7%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 42.0 3.82e-01 70.3% 72.1%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 37.0 3.25e-01 80.0% 45.5%
1z23A00 1.20.120.830 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain 0.57 35.0 3.56e-01 78.2% 60.7%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.57 42.0 3.95e-01 77.0% 77.3%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.56 42.0 3.95e-01 77.0% 76.5%
1oahA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 30.0 3.21e-01 87.3% 62.0%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.54 36.0 3.83e-01 85.5% 76.7%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.53 41.0 3.96e-01 91.5% 72.1%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.53 31.0 3.49e-01 72.7% 72.9%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 44.0 4.44e-01 90.3% 87.5%
4o6yB00 1.20.120.1770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 38.0 3.46e-01 75.2% 67.3%
2rd3D00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.51 37.0 3.38e-01 72.7% 88.1%
8h6rA01 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.51 27.0 3.68e-01 70.3% 100.0%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.51 31.0 3.42e-01 73.9% 73.5%
4u72A01 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 38.0 3.41e-01 77.0% 81.1%
1lb3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 38.0 3.81e-01 77.6% 76.6%
6grjB01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.50 40.0 3.25e-01 84.2% 81.4%
3mvuA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.50 36.0 3.27e-01 72.1% 86.6%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.50 37.0 3.94e-01 80.6% 84.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4501359 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.65 45.0 5.07e-01 74.5% 93.6%
3598168 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.64 35.0 3.57e-01 70.9% 53.3%
3613756 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.63 45.0 3.57e-01 72.1% 68.1%
4583117 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.63 35.0 4.03e-01 83.6% 73.3%
4001943 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.63 44.0 5.19e-01 83.0% 99.2%
3716876 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.63 44.0 3.66e-01 71.5% 68.2%
3980942 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 34.0 4.22e-01 83.0% 86.0%
3620861 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.62 45.0 4.94e-01 84.8% 90.4%
4002586 622.4.1.31 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › TPR_SYVN1_N 0.60 43.0 4.04e-01 72.1% 69.7%
3800989 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 42.0 3.88e-01 73.3% 65.2%
5002671 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.59 36.0 3.72e-01 70.3% 63.7%
3632025 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.59 40.0 4.46e-01 88.5% 85.2%
3269187 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 42.0 3.72e-01 77.0% 64.6%
3239865 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.56 43.0 4.72e-01 86.1% 96.3%
3733145 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 44.0 4.74e-01 87.9% 95.7%
3339772 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.55 37.0 4.00e-01 75.8% 79.3%
3184118 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.55 39.0 3.87e-01 73.3% 88.9%
3523336 174.1.1.12 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › BCLP 0.55 46.0 4.55e-01 87.3% 98.2%
3991109 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.54 44.0 4.76e-01 84.2% 100.0%
5066783 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.54 46.0 4.68e-01 90.9% 95.8%
3637886 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 3.99e-01 78.2% 93.3%
3216366 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 44.0 4.37e-01 84.8% 88.8%
3326634 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.53 44.0 4.39e-01 87.3% 86.9%
3417891 633.21.1.18 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.53 43.0 4.53e-01 84.8% 98.1%
3868831 174.1.1.43 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.53 43.0 4.35e-01 84.8% 87.3%
3765032 633.23.1.34 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.53 43.0 4.63e-01 84.8% 98.6%
3748303 174.1.1.52 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF27925 0.53 43.0 4.54e-01 86.1% 94.0%
3417339 633.23.1.32 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › CASP_dom 0.53 45.0 4.52e-01 87.9% 95.8%
3913234 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.53 39.0 4.26e-01 83.6% 91.1%
3392666 603.1.1.104 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.53 45.0 3.43e-01 89.7% 93.5%
3617743 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.53 43.0 4.62e-01 89.7% 98.6%
3911582 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.53 43.0 4.56e-01 87.9% 95.3%
4979030 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.52 40.0 4.33e-01 80.6% 99.3%
3888824 601.1.2.11 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › CD20 0.51 41.0 4.29e-01 83.0% 92.7%
4030405 603.6.1.0 ↗ alpha bundles › STAT-like › MukF C-terminal domain-like › MukF C-terminal domain-like 0.51 40.0 3.73e-01 82.4% 89.0%
3933742 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 41.0 4.17e-01 83.6% 85.6%
3690029 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 42.0 4.13e-01 86.1% 81.1%
3616490 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 41.0 4.36e-01 86.1% 95.3%
3475509 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.51 45.0 4.36e-01 93.9% 96.7%
3998921 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.51 42.0 4.42e-01 86.7% 96.0%
3914117 630.1.1.1 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.51 42.0 4.45e-01 85.5% 100.0%
3236786 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 39.0 4.26e-01 83.0% 94.3%
3563979 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.50 41.0 4.37e-01 86.1% 96.6%
D2 high residues 78-266
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_690__YP_009481374__Pandoravirus_macleodensis__2107707__D38-243
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19207.6 best DUF5879 340.7 8.80e-102 100.0% 69.2%