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hypothetical_protein_psal_cds_1330

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_1330__YP_008438795__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438795 ↗
Protein ID:
hypothetical_protein_psal_cds_1330
Kingdom:
euk

Quality

72.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-68
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.79 54.0 5.79e-01 73.2% 87.0%
4gr2A00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.64 45.0 3.65e-01 75.0% 43.6%
3zrgA00 1.10.10.2470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 44.0 4.19e-01 80.4% 62.1%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 41.0 2.97e-01 71.4% 34.2%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.06e-01 83.9% 90.9%
3fhdA01 1.20.120.860 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain 0.59 40.0 3.08e-01 83.9% 29.4%
2w45A01 1.20.120.860 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain 0.57 40.0 3.22e-01 75.0% 37.1%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.56 39.0 3.51e-01 75.0% 74.1%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3643098 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 59.0 5.95e-01 76.8% 72.7%
3312286 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.84 59.0 3.45e-01 76.8% 10.4%
3643788 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 58.0 5.91e-01 73.2% 83.6%
3423604 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 58.0 6.12e-01 73.2% 84.0%
3693224 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 55.0 6.26e-01 75.0% 97.5%
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.81 57.0 6.24e-01 76.8% 91.1%
3646977 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 57.0 6.21e-01 80.4% 91.1%
3450600 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 56.0 6.13e-01 73.2% 91.1%
3640174 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 60.0 5.45e-01 82.1% 64.0%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 52.0 5.39e-01 73.2% 73.6%
3658277 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 58.0 5.71e-01 78.6% 83.3%
3207824 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 66.0 4.11e-01 98.2% 18.0%
3814088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 55.0 5.93e-01 78.6% 95.6%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 65.0 5.87e-01 100.0% 96.2%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 57.0 5.33e-01 89.3% 65.7%
3404584 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 53.0 5.77e-01 75.0% 93.3%
3827935 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 56.0 6.05e-01 82.1% 100.0%
3898084 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 64.0 5.04e-01 100.0% 67.5%
3448206 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 57.0 5.79e-01 94.6% 85.5%
3698257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 64.0 5.72e-01 100.0% 96.2%
3642624 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.73 62.0 4.23e-01 98.2% 71.4%
3559990 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 62.0 5.55e-01 98.2% 98.8%
3685791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 56.0 5.69e-01 85.7% 92.7%
3443498 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 63.0 5.50e-01 100.0% 67.1%
3826138 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.71 63.0 3.68e-01 100.0% 29.4%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.71 63.0 3.81e-01 100.0% 23.8%
3430952 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.71 64.0 3.69e-01 100.0% 15.2%
3433340 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 59.0 5.01e-01 92.9% 78.5%
3464778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 61.0 5.38e-01 100.0% 70.6%
3422849 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 55.0 5.80e-01 87.5% 100.0%
3650217 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 59.0 5.37e-01 92.9% 83.8%
3810649 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 60.0 3.58e-01 98.2% 27.3%
3819371 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 60.0 6.13e-01 96.4% 98.2%
3679680 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 61.0 4.79e-01 98.2% 81.7%
3829036 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 58.0 4.87e-01 92.9% 80.6%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 58.0 5.29e-01 96.4% 96.0%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 60.0 5.13e-01 100.0% 82.2%
3661996 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 53.0 4.97e-01 96.4% 70.0%
3810013 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 59.0 5.64e-01 98.2% 98.4%
3370474 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 59.0 5.62e-01 100.0% 86.2%
None — 0.65 59.0 3.32e-01 100.0% 73.7%
3934680 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.63 49.0 5.09e-01 85.7% 98.0%
D2 medium residues 69-123
PDB