←Back to structures

hypothetical_protein_psal_cds_137

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_137__YP_008436657__Pandoravirus_salinus__1349410

Identity

Accession:: YP_008436657 ↗
Protein ID:: hypothetical_protein_psal_cds_137
Kingdom:: euk

Quality

70.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-54

PDB

Domain cluster: representative

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3dd9D02	6.10.140.2060	Special › Helix non-globular › Helix Hairpins ›	0.84	61.0	6.69e-01	88.0%	95.1%
2ktmA00	1.10.790.10	Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain	0.82	70.0	6.29e-01	94.0%	73.5%
3umbA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.77	63.0	5.40e-01	90.0%	60.8%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.74	55.0	4.91e-01	82.0%	58.1%
8igrI01	2.40.270.10	Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6	0.73	57.0	3.94e-01	88.0%	68.2%
2bg1A01	3.90.1310.40	Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) ›	0.71	61.0	5.33e-01	98.0%	81.8%
4ysxC00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.71	54.0	3.90e-01	86.0%	43.8%
3k6hA01	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.69	58.0	4.07e-01	98.0%	70.1%
1lkoA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.68	48.0	3.49e-01	76.0%	63.4%
4jneA03	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.67	54.0	4.54e-01	92.0%	61.4%
2jaeA03	1.20.1440.240	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.66	52.0	4.14e-01	86.0%	92.1%
2gwlA00	3.90.176.10	Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1	0.66	48.0	3.17e-01	78.0%	51.5%
2vxdA00	1.10.10.2100	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain	0.65	42.0	4.12e-01	72.0%	61.1%
2g5gX02	1.10.8.760	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2	0.64	49.0	4.71e-01	94.0%	71.2%
3ddhA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.64	50.0	4.36e-01	88.0%	55.6%
1kfdA02	1.20.1060.10	Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4	0.64	49.0	4.39e-01	84.0%	60.6%
2rp4A00	6.10.280.60	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain	0.63	43.0	3.95e-01	74.0%	53.5%
2ajrA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.63	53.0	3.42e-01	98.0%	19.2%
3oxfA05	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.62	44.0	3.88e-01	78.0%	50.7%
3h2zA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.61	49.0	3.52e-01	100.0%	44.3%
2blfB01	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.61	42.0	4.00e-01	80.0%	60.3%
3mggA02	6.10.140.1580	Special › Helix non-globular › Helix Hairpins ›	0.61	50.0	4.25e-01	98.0%	62.9%
7dukB01	1.10.287.610	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.59	41.0	4.29e-01	74.0%	80.4%
4i8oA03	1.10.8.1130	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain	0.57	42.0	3.99e-01	88.0%	67.2%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4955904	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.82	62.0	5.09e-01	84.0%	45.6%
4951422	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.79	71.0	5.61e-01	100.0%	69.0%
3872568	220.1.1.4 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1	0.74	59.0	4.03e-01	86.0%	25.3%
4509127	1075.5.1.2 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ	0.64	58.0	3.78e-01	100.0%	76.6%
3168854	4970.1.1.13 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › zf-C4pol	0.60	52.0	4.07e-01	100.0%	46.8%
3576327	6067.1.1.1 ↗	alpha arrays › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › SGTA_dimer	0.56	48.0	4.22e-01	98.0%	81.3%

D2 medium residues 55-69_127-161

PDB

D3 medium residues 70-126

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3804047	376.1.3.32 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom	0.58	43.0	3.66e-01	82.5%	82.5%