←Back to structures

hypothetical_protein_psal_cds_223

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_223__YP_008436819__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008436819 ↗
Protein ID:
hypothetical_protein_psal_cds_223
Kingdom:
euk

Quality

63.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-121
PDB
D2 high residues 160-270
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_1104__YP_009483795__Pandoravirus_quercus__2107709__D75-181
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dixA02 2.30.29.140 Mainly Beta › Roll › PH-domain like › 0.57 42.0 4.13e-01 96.4% 70.4%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 33.0 2.81e-01 91.9% 32.5%
1vwxk00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 31.0 3.74e-01 89.2% 87.0%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 4.05e-01 93.7% 81.5%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 4.12e-01 96.4% 83.5%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.52 33.0 2.63e-01 99.1% 30.6%
3safB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 35.0 2.62e-01 92.8% 27.1%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 30.0 3.16e-01 77.5% 63.9%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.81e-01 95.5% 73.6%
1yt3A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 33.0 2.80e-01 93.7% 37.6%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 33.0 2.76e-01 91.0% 35.2%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 25.0 3.28e-01 77.5% 91.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3697550 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.62 36.0 4.10e-01 92.8% 77.5%
4936961 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 41.0 4.60e-01 93.7% 96.5%
3627627 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 44.0 4.03e-01 95.5% 60.7%
4031810 2484.1.1.96 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_polI_exo1 0.57 35.0 2.90e-01 92.8% 33.3%
5039029 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.57 41.0 4.43e-01 91.0% 92.2%
4936800 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 40.0 4.04e-01 89.2% 74.5%
3273237 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.56 42.0 4.09e-01 97.3% 70.4%
3883832 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 43.0 3.84e-01 96.4% 56.9%
3899773 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 45.0 3.64e-01 85.6% 77.6%
3876271 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 28.0 3.53e-01 78.4% 83.3%
3787887 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.56 35.0 4.09e-01 91.9% 94.5%
4339694 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 34.0 2.25e-01 92.8% 14.4%
4192693 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 40.0 4.47e-01 91.9% 100.0%
5080919 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 4.11e-01 93.7% 80.0%
3400709 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 36.0 2.80e-01 91.9% 30.2%
4949986 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.52 39.0 3.98e-01 95.5% 80.9%
4584002 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.51 40.0 4.11e-01 95.5% 88.6%
3223154 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.51 42.0 3.94e-01 94.6% 72.9%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 39.0 3.65e-01 84.7% 87.6%
D3 medium residues 421-547
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_170__YP_009480854__Pandoravirus_macleodensis__2107707__D392-533
D4 medium residues 548-626
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp0412__YP_009119381__Pandoravirus_inopinatum__1605721__D108-174