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hypothetical_protein_psal_cds_253

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_253__YP_008436875__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008436875 ↗
Protein ID:
hypothetical_protein_psal_cds_253
Kingdom:
euk

Quality

71.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 223-284_311-377
PDB
Domain cluster: rep: F-box_domain__YP_008437564__Pandoravirus_salinus__1349410__D85-110_149-282
D2 medium residues 378-535
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_245__YP_009482936__Pandoravirus_quercus__2107709__D413-599
D3 medium residues 536-594
PDB
Domain cluster: representative
CATH (79)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 70.0 5.99e-01 98.3% 59.3%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 69.0 6.27e-01 94.9% 74.4%
2q5zB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.79 66.0 5.51e-01 88.1% 62.8%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 69.0 5.64e-01 96.6% 54.7%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.79 65.0 4.95e-01 88.1% 40.6%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.78 71.0 6.16e-01 100.0% 73.9%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.78 70.0 5.61e-01 98.3% 56.4%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 70.0 6.59e-01 100.0% 85.9%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.77 68.0 4.66e-01 100.0% 33.3%
2x9xA04 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 59.0 6.15e-01 81.4% 92.6%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 67.0 6.56e-01 98.3% 96.8%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.76 65.0 4.79e-01 94.9% 100.0%
1bf5A01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.76 65.0 4.68e-01 96.6% 52.4%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.76 61.0 4.95e-01 100.0% 46.2%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.75 66.0 5.95e-01 98.3% 75.3%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.75 67.0 5.34e-01 100.0% 53.0%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.74 66.0 4.79e-01 98.3% 49.1%
3vkgB06 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.74 66.0 4.30e-01 98.3% 38.8%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 60.0 6.15e-01 88.1% 98.2%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 52.0 5.19e-01 79.7% 72.1%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.74 66.0 5.98e-01 98.3% 74.4%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 64.0 4.17e-01 98.3% 23.3%
3rx6A00 1.20.58.1090 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer 0.73 65.0 4.51e-01 98.3% 32.6%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.73 63.0 4.68e-01 96.6% 100.0%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.72 63.0 3.97e-01 98.3% 19.7%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.72 63.0 4.71e-01 96.6% 41.8%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.72 62.0 4.97e-01 98.3% 49.2%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.72 61.0 4.22e-01 98.3% 28.6%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 63.0 5.65e-01 98.3% 76.5%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.72 54.0 5.84e-01 83.1% 100.0%
1st6A03 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.71 63.0 4.23e-01 100.0% 80.3%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 58.0 5.42e-01 91.5% 71.6%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.70 53.0 3.86e-01 91.5% 30.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.70 60.0 5.99e-01 98.3% 93.4%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 55.0 5.14e-01 98.3% 69.9%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.70 60.0 4.76e-01 94.9% 48.7%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.70 61.0 5.74e-01 100.0% 84.9%
1v9dB00 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.70 59.0 3.77e-01 100.0% 19.0%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 60.0 5.21e-01 98.3% 65.2%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.69 58.0 4.86e-01 98.3% 62.4%
6iknD01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 60.0 3.94e-01 100.0% 67.4%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.69 58.0 4.19e-01 100.0% 95.1%
1kqfC00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.68 60.0 4.08e-01 100.0% 44.0%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.68 58.0 4.17e-01 98.3% 53.6%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.68 57.0 4.79e-01 96.6% 84.9%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.68 57.0 5.55e-01 96.6% 92.4%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 56.0 4.75e-01 94.9% 54.9%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 56.0 5.26e-01 96.6% 76.3%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 55.0 4.59e-01 94.9% 75.0%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 57.0 4.60e-01 98.3% 49.6%
7miqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 56.0 4.69e-01 96.6% 55.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.67 54.0 5.26e-01 89.8% 83.1%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.67 54.0 5.13e-01 93.2% 83.8%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.66 55.0 4.79e-01 98.3% 60.0%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 54.0 5.28e-01 96.6% 100.0%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.66 55.0 5.52e-01 98.3% 98.3%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.66 54.0 4.53e-01 98.3% 75.4%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 53.0 4.01e-01 93.2% 35.7%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.65 55.0 4.92e-01 96.6% 65.5%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.65 52.0 4.72e-01 91.5% 63.5%
4nswB01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 55.0 3.67e-01 100.0% 61.7%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 56.0 4.63e-01 100.0% 76.6%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.65 53.0 5.38e-01 94.9% 98.3%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 57.0 4.98e-01 100.0% 64.8%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.65 50.0 4.16e-01 88.1% 47.2%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.65 52.0 5.23e-01 96.6% 95.1%
1orsC00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.64 56.0 4.36e-01 100.0% 93.2%
1m7wA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.64 54.0 3.71e-01 98.3% 45.7%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 52.0 5.31e-01 96.6% 98.3%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 52.0 4.27e-01 100.0% 64.2%
3k62A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 51.0 3.09e-01 91.5% 14.0%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 52.0 4.57e-01 100.0% 65.6%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.61 48.0 4.21e-01 91.5% 57.9%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.60 50.0 4.31e-01 94.9% 58.6%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.59 43.0 3.00e-01 81.4% 21.2%
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.59 49.0 3.66e-01 100.0% 75.0%
3mekA04 1.25.40.970 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 41.0 3.74e-01 76.3% 55.0%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.58 48.0 4.16e-01 100.0% 60.2%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 49.0 3.16e-01 98.3% 20.9%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3225375 601.1.3.6 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 › Talin_IBS2B 0.82 76.0 5.41e-01 100.0% 41.9%
3636334 4177.1.1.5 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.80 73.0 4.73e-01 100.0% 31.6%
3471712 604.8.1.0 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.79 69.0 5.32e-01 94.9% 70.4%
4605223 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.79 67.0 5.73e-01 91.5% 71.1%
3504347 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.78 71.0 6.01e-01 100.0% 69.5%
4324117 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.78 69.0 4.20e-01 98.3% 26.6%
3189247 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.78 69.0 4.55e-01 98.3% 26.5%
2507423 632.2.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › FIVAR 0.78 66.0 5.95e-01 93.2% 69.2%
3211462 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 70.0 4.48e-01 100.0% 28.1%
3251093 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 69.0 5.50e-01 98.3% 53.9%
4976290 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.77 70.0 6.28e-01 98.3% 73.8%
1291200 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.77 69.0 4.34e-01 98.3% 21.0%
3740053 4177.1.1.27 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4 0.77 69.0 4.35e-01 96.6% 25.2%
3662351 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.77 67.0 5.21e-01 96.6% 51.2%
5037413 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 67.0 4.83e-01 96.6% 47.3%
3705716 3559.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 0.77 66.0 5.14e-01 96.6% 46.9%
3271303 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.77 69.0 4.44e-01 100.0% 23.4%
3255232 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.77 66.0 4.32e-01 96.6% 42.0%
4214655 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.77 67.0 6.07e-01 98.3% 73.8%
5005724 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.77 66.0 4.34e-01 94.9% 99.1%
4946568 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 67.0 3.80e-01 100.0% 57.9%
4408647 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.76 67.0 5.54e-01 98.3% 64.8%
3170172 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.76 68.0 4.44e-01 100.0% 68.0%
3923553 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 69.0 4.85e-01 100.0% 34.9%
3609066 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 67.0 5.39e-01 100.0% 82.6%
3976215 105.2.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.76 66.0 4.87e-01 98.3% 52.9%
3584009 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.75 62.0 4.07e-01 91.5% 25.7%
3213281 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.75 67.0 4.26e-01 98.3% 22.6%
3600361 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.75 67.0 5.74e-01 100.0% 68.4%
4946898 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.75 66.0 6.11e-01 98.3% 88.0%
3736828 109.4.1.911 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.75 68.0 3.91e-01 100.0% 11.7%
3757999 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.75 65.0 4.14e-01 100.0% 19.7%
3505608 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.75 68.0 6.25e-01 100.0% 82.7%
3205582 605.8.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › PF27894 0.75 62.0 6.04e-01 91.5% 83.1%
3576467 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.75 66.0 4.11e-01 98.3% 20.0%
4953696 3843.1.1.37 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2109 0.75 62.0 5.57e-01 91.5% 68.8%
4096596 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.74 64.0 3.80e-01 98.3% 13.3%
4000262 192.5.1.1 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.74 65.0 5.65e-01 98.3% 67.8%
3790121 603.1.1.114 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1 0.74 65.0 5.44e-01 98.3% 61.0%
4569741 3712.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.73 65.0 5.22e-01 100.0% 54.8%
3909017 192.5.1.1 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.73 65.0 5.61e-01 98.3% 68.9%
3618935 192.15.1.77 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 0.73 63.0 5.15e-01 100.0% 72.2%
3506760 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 64.0 4.98e-01 98.3% 89.2%
4132296 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.73 63.0 6.31e-01 98.3% 100.0%
3268765 4177.1.1.8 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.73 63.0 4.16e-01 96.6% 25.4%
3570582 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.72 62.0 4.57e-01 94.9% 38.0%
3722750 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.71 60.0 3.84e-01 98.3% 55.9%
4945538 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 62.0 5.92e-01 100.0% 88.6%
4016292 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.71 63.0 4.83e-01 100.0% 45.9%
3721457 3291.1.1.134 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › MPC 0.71 63.0 5.30e-01 100.0% 61.0%
3249236 4207.1.2.93 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › RNA12 0.71 61.0 4.16e-01 98.3% 37.2%
3588519 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.71 61.0 4.43e-01 98.3% 37.0%
3239510 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.70 62.0 5.33e-01 100.0% 65.3%
3711643 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.70 59.0 3.89e-01 98.3% 60.0%
4042824 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.69 58.0 5.26e-01 98.3% 68.8%
3829400 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.69 59.0 4.93e-01 94.9% 54.4%
3936972 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 60.0 4.81e-01 100.0% 51.7%
3713350 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.68 58.0 4.73e-01 100.0% 78.3%
3762595 604.7.1.13 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › HR1 0.68 59.0 5.14e-01 98.3% 67.8%
3396625 4177.1.1.12 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAM92 0.68 58.0 3.95e-01 100.0% 28.3%
3883124 3892.1.1.2 ↗ alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II › PNTB_4TM 0.67 54.0 4.29e-01 91.5% 50.0%
3845412 626.1.1.2 ↗ alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2,Drf_DAD 0.67 56.0 3.36e-01 98.3% 13.3%
4961961 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.67 57.0 5.33e-01 98.3% 82.7%
3961148 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 55.0 4.49e-01 98.3% 51.7%
3739454 192.5.1.38 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 0.66 56.0 4.73e-01 100.0% 82.9%
3660496 604.3.1.19 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF3475 0.66 56.0 3.81e-01 98.3% 77.3%
3780651 3602.1.1.0 ↗ alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.66 55.0 5.38e-01 96.6% 92.3%
3944731 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.66 56.0 4.10e-01 98.3% 37.0%
4045132 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.66 55.0 4.59e-01 98.3% 55.5%
4650429 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.65 57.0 4.93e-01 100.0% 62.1%
3181110 5086.1.1.110 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.65 55.0 4.78e-01 98.3% 65.3%
3625044 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 55.0 4.61e-01 98.3% 58.1%
3400466 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.64 54.0 4.32e-01 100.0% 50.0%
3676480 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 51.0 4.62e-01 98.3% 83.3%
5074674 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 51.0 3.90e-01 89.8% 38.6%
4549103 3755.4.1.54 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF30340 0.61 51.0 3.16e-01 98.3% 16.1%
4534540 3718.1.1.1 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.61 47.0 4.06e-01 91.5% 50.5%
4001568 3892.1.1.2 ↗ alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II › PNTB_4TM 0.61 51.0 4.38e-01 98.3% 69.0%
3331225 5042.1.1.0 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.59 46.0 4.47e-01 91.5% 81.4%
None — 0.59 49.0 2.91e-01 96.6% 11.4%
D4 medium residues 595-644
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ft9A02 3.40.50.11980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 46.0 3.21e-01 76.0% 24.6%
3gzdA03 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.62 42.0 2.84e-01 72.0% 20.6%
3v33B00 3.40.50.11980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 41.0 2.97e-01 80.0% 25.0%
2b3yA02 3.40.1060.10 Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 0.52 35.0 2.68e-01 72.0% 32.0%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 46.0 3.32e-01 98.0% 51.9%
1ofdA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 41.0 2.60e-01 100.0% 85.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3640991 7542.1.2.0 ↗ a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II 0.70 47.0 4.02e-01 70.0% 45.0%
4955190 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.70 47.0 3.23e-01 72.0% 19.7%
4638793 2006.1.4.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 0.70 48.0 3.55e-01 72.0% 28.8%
4028944 2006.1.4.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PRORP 0.69 51.0 3.68e-01 80.0% 27.6%
3591551 2006.1.4.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PRORP 0.68 51.0 3.24e-01 82.0% 16.4%
5012131 2006.1.4.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 0.68 46.0 3.49e-01 72.0% 30.0%
3365826 109.4.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.65 48.0 3.25e-01 82.0% 43.0%
5046450 7512.1.1.12 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C 0.65 44.0 3.22e-01 70.0% 32.6%
3501214 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.64 47.0 3.58e-01 80.0% 33.6%
4659972 2003.1.2.56 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_9 0.62 46.0 2.69e-01 80.0% 9.6%
3710814 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.62 43.0 3.35e-01 76.0% 81.7%
None — 0.52 40.0 2.35e-01 96.0% 55.0%