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hypothetical_protein_psal_cds_254
Euk-VirPandoravirus_salinus
hypothetical_protein_psal_cds_254__YP_008436877__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008436877 ↗
- Protein ID:
- hypothetical_protein_psal_cds_254
- Kingdom:
- euk
Quality
60.1
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 75-186
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.71 | 32.0 | 4.19e-01 | 91.1% | 73.8% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.63 | 36.0 | 4.34e-01 | 78.6% | 85.1% |
| 2cfoA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 43.0 | 4.44e-01 | 92.0% | 86.5% |
| 6f7hA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.55 | 45.0 | 3.57e-01 | 92.0% | 92.0% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.53 | 37.0 | 4.00e-01 | 90.2% | 89.9% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.85e-01 | 85.7% | 78.6% |
| 1zvuA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.52 | 32.0 | 3.00e-01 | 81.2% | 47.9% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 36.0 | 2.90e-01 | 71.4% | 52.0% |
| 1qmgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 41.0 | 3.08e-01 | 85.7% | 97.6% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 36.0 | 3.57e-01 | 74.1% | 68.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.59 | 42.0 | 3.43e-01 | 74.1% | 76.1% | |
| 3171543 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.56 | 40.0 | 3.21e-01 | 75.0% | 71.7% |
| 3367461 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.55 | 40.0 | 3.92e-01 | 76.8% | 100.0% |
| 3710221 | 197.1.1.7 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › PriCT_2 | 0.55 | 37.0 | 3.77e-01 | 91.1% | 70.0% |
| 3504469 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.52 | 33.0 | 3.28e-01 | 93.8% | 59.2% |
| 3790618 | 621.1.1.1 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C | 0.51 | 38.0 | 3.96e-01 | 77.7% | 82.9% |