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hypothetical_protein_psal_cds_267

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_267__YP_009429987__Pandoravirus_salinus__1349410

Identity

Accession:
YP_009429987 ↗
Protein ID:
hypothetical_protein_psal_cds_267
Kingdom:
euk

Quality

69.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 101-170
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 41.0 3.81e-01 84.3% 43.3%
4bwxA03 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 41.0 3.92e-01 85.7% 50.0%
2lfrA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.67 47.0 4.04e-01 100.0% 46.8%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.65 47.0 3.97e-01 75.7% 56.5%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.65 47.0 5.16e-01 100.0% 96.4%
4a2aA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.65 40.0 4.14e-01 80.0% 66.2%
3h09A04 4.10.1240.40 Few Secondary Structures › Irregular › Hormone receptor fold › 0.64 30.0 3.03e-01 82.9% 40.3%
3wt0A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 40.0 3.06e-01 77.1% 27.5%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.59 46.0 4.10e-01 100.0% 56.2%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 38.0 3.03e-01 100.0% 29.2%
5lnxF01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.59 43.0 3.75e-01 81.4% 72.0%
2jifA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.59 43.0 3.75e-01 81.4% 71.2%
2w8mA00 3.40.1350.50 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif 0.57 50.0 3.83e-01 100.0% 55.8%
4ielA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 48.0 4.11e-01 98.6% 75.9%
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.55 41.0 2.54e-01 82.9% 42.9%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 46.0 3.45e-01 98.6% 83.3%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 47.0 3.99e-01 98.6% 76.1%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.53 38.0 4.12e-01 91.4% 93.0%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.53 46.0 4.14e-01 100.0% 83.0%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.53 45.0 4.36e-01 100.0% 89.2%
5jpoD02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 42.0 3.47e-01 98.6% 46.6%
4narA02 3.90.226.30 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain 0.52 38.0 2.98e-01 98.6% 33.5%
4iv6B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 45.0 3.82e-01 95.7% 68.1%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 44.0 3.05e-01 92.9% 62.3%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.51 43.0 4.17e-01 100.0% 87.8%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.92e-01 94.3% 35.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607471 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 49.0 3.77e-01 95.7% 34.2%
4608282 2484.1.1.70 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA 0.67 39.0 2.43e-01 77.1% 10.4%
4191047 2484.1.1.245 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA 0.66 41.0 2.57e-01 77.1% 11.4%
1145958 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.65 47.0 3.49e-01 75.7% 36.9%
1551409 2484.1.1.70 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA 0.65 40.0 2.98e-01 77.1% 23.5%
4435043 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.65 40.0 2.53e-01 77.1% 11.4%
4032204 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.64 40.0 2.52e-01 77.1% 11.4%
4113442 101.26.1.2 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.61 45.0 3.57e-01 78.6% 50.3%
3816842 109.4.1.498 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4487 0.61 52.0 3.06e-01 100.0% 15.6%
3795565 174.1.1.14 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NKAIN 0.61 42.0 3.11e-01 71.4% 96.1%
4979787 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 3.96e-01 81.4% 87.3%
4440301 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.60 35.0 3.90e-01 75.7% 74.5%
3627712 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 42.0 2.47e-01 81.4% 33.0%
3929962 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.55 44.0 3.05e-01 90.0% 89.8%
5044432 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.54 43.0 3.52e-01 90.0% 54.3%
3343270 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.53 45.0 4.05e-01 94.3% 77.6%
4940054 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.87e-01 88.6% 74.7%
3725706 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.83e-01 90.0% 86.0%
3208003 109.4.1.1685 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27595, PF30849 0.52 45.0 2.64e-01 100.0% 14.1%
3269478 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.50 40.0 2.66e-01 90.0% 28.4%
D2 medium residues 288-437
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_36__YP_009480720__Pandoravirus_macleodensis__2107707__D324-473