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hypothetical_protein_psal_cds_330

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_330__YP_009429998__Pandoravirus_salinus__1349410

Identity

Accession:
YP_009429998 ↗
Protein ID:
hypothetical_protein_psal_cds_330
Kingdom:
euk

Quality

70.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-67
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_316__YP_009483007__Pandoravirus_quercus__2107709__D21-75
D2 high residues 191-376
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_357__YP_008437077__Pandoravirus_salinus__1349410__D224-353
D3 medium residues 69-79_113-190
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_1078__YP_009482688__Pandoravirus_neocaledonia__2107708__D193-222_251-286
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qm9A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 42.0 4.10e-01 70.8% 99.0%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 34.0 3.26e-01 79.8% 47.7%
3to8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 38.0 3.70e-01 70.8% 92.2%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.36e-01 77.5% 60.9%
2rt3A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 39.0 3.81e-01 78.7% 82.5%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 31.0 3.11e-01 78.7% 56.0%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.21e-01 83.1% 54.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3999651 904.1.1.14 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › SNAPC3 0.67 46.0 5.24e-01 74.2% 98.5%
3782443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 44.0 3.66e-01 73.0% 39.4%
4468258 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.61 43.0 4.21e-01 73.0% 90.5%
4137585 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.59 40.0 4.15e-01 70.8% 98.8%
4220105 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.58 46.0 3.93e-01 88.8% 74.0%
4059991 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.56 45.0 4.01e-01 89.9% 83.7%
4494566 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.56 45.0 3.89e-01 89.9% 77.9%
5059796 4326.1.1.0 ↗ a+b two layers › ERH-like › ERH-like › ERH-like 0.56 34.0 3.74e-01 80.9% 78.3%
4929321 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 36.0 4.20e-01 78.7% 100.0%
5048876 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.54 34.0 3.81e-01 78.7% 86.2%
4340143 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 38.0 4.19e-01 91.0% 95.7%
3520955 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.51 40.0 2.91e-01 86.5% 58.1%
3243876 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 41.0 3.92e-01 93.3% 74.3%
3385583 288.1.1.1 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.50 40.0 3.13e-01 91.0% 88.2%