←Back to structures

hypothetical_protein_psal_cds_523

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_523__YP_008437419__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437419 ↗
Protein ID:
hypothetical_protein_psal_cds_523
Kingdom:
euk

Quality

86.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (60 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-102
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yr7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 42.0 3.07e-01 72.0% 48.8%
5ja4D00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.61 50.0 4.13e-01 90.2% 54.4%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 52.0 4.15e-01 100.0% 81.6%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 47.0 4.29e-01 90.2% 85.5%
2nxpB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.54 41.0 3.44e-01 81.7% 57.2%
2c2lA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 47.0 4.08e-01 100.0% 73.7%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.54 40.0 3.86e-01 81.7% 91.9%
4ackB00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.53 42.0 3.56e-01 90.2% 84.3%
2kd1A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 41.0 3.68e-01 90.2% 70.3%
2dc0A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.50 41.0 2.74e-01 98.8% 82.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4378444 109.25.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.71 50.0 4.40e-01 73.2% 96.7%
3264767 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.63 55.0 4.63e-01 100.0% 73.8%
3633420 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 45.0 3.30e-01 79.3% 82.3%
3714154 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 44.0 3.37e-01 78.0% 68.6%
185688 109.25.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.59 47.0 4.28e-01 90.2% 88.1%
3790404 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 45.0 3.46e-01 81.7% 60.5%
3625019 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.95e-01 100.0% 83.1%
3594923 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 50.0 3.77e-01 100.0% 52.3%
3907391 109.25.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.58 45.0 4.20e-01 87.8% 96.4%
5063219 109.25.1.15 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › Cpn60_TCP1 0.58 50.0 4.25e-01 100.0% 87.6%
4817370 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.57 47.0 3.86e-01 93.9% 98.8%
3816923 109.4.1.1347 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16, TPR_19 0.52 45.0 2.79e-01 100.0% 18.3%
4946837 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 44.0 3.71e-01 100.0% 81.1%
4971029 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.50 38.0 3.18e-01 84.1% 73.4%
D2 medium residues 103-228
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_435__YP_009481119__Pandoravirus_macleodensis__2107707__D130-220
D3 medium residues 229-331
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_570__YP_008319357__Pandoravirus_dulcis__1349409__D331-429
D4 medium residues 332-422
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_620__YP_009483311__Pandoravirus_quercus__2107709__D505-577
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hi8A00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.80 73.0 5.87e-01 100.0% 65.3%
1n11A00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.80 73.0 4.67e-01 100.0% 25.5%
3twqA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.79 72.0 5.88e-01 100.0% 68.3%
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.78 64.0 6.30e-01 87.9% 88.7%
2rfmB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.78 71.0 5.56e-01 100.0% 56.0%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.67 55.0 5.38e-01 90.1% 90.2%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 53.0 5.37e-01 86.8% 93.3%
3cf6E05 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.62 51.0 3.79e-01 90.1% 56.8%
5ctrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 54.0 3.78e-01 100.0% 41.3%
1avcA07 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.60 42.0 4.52e-01 72.5% 98.7%
4rg6A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 48.0 4.32e-01 90.1% 64.7%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 48.0 4.07e-01 90.1% 72.2%
2vyiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 47.0 4.29e-01 100.0% 85.2%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238243 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.78 71.0 5.20e-01 100.0% 58.3%
3294940 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.78 71.0 4.40e-01 100.0% 21.3%
3820784 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.77 71.0 5.19e-01 100.0% 44.3%
3438992 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.77 71.0 5.44e-01 100.0% 52.3%
3806290 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.77 70.0 5.79e-01 100.0% 63.7%
3365622 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.77 70.0 4.48e-01 100.0% 24.6%
3323300 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.77 69.0 5.24e-01 100.0% 49.3%
3446444 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.77 70.0 4.80e-01 100.0% 34.0%
None — 0.77 70.0 4.52e-01 100.0% 26.2%
3659967 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.77 70.0 5.08e-01 100.0% 42.1%
3186674 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.76 68.0 5.78e-01 100.0% 64.7%
3276792 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.75 68.0 5.94e-01 100.0% 68.9%
3272785 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.74 65.0 4.89e-01 97.8% 43.1%
3273581 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.73 66.0 3.79e-01 100.0% 18.9%
3478148 109.4.1.632 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS22L_C 0.70 62.0 4.15e-01 100.0% 50.8%
3709547 4299.1.1.2 ↗ alpha arrays › BSD domain › BSD domain › BSD domain › DUF4476 0.68 57.0 5.69e-01 91.2% 92.4%
3728888 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.64 57.0 4.23e-01 97.8% 57.0%
None — 0.63 54.0 4.55e-01 100.0% 78.8%
3542548 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.63 54.0 4.42e-01 100.0% 72.4%
3909988 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 4.44e-01 93.4% 67.6%
3507056 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 4.47e-01 93.4% 71.4%
4015636 109.59.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain 0.59 47.0 4.90e-01 96.7% 98.8%
D5 medium residues 423-495
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_435__YP_009481119__Pandoravirus_macleodensis__2107707__D433-490
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xioA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.61 52.0 3.58e-01 100.0% 47.4%
3u5ei01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.53 32.0 3.33e-01 80.8% 64.2%
1b4cA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 36.0 3.37e-01 76.7% 90.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3899836 2006.1.1.41 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5-nucleotidase 0.61 47.0 3.73e-01 84.9% 59.4%
3915210 2006.1.1.41 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5-nucleotidase 0.58 46.0 3.55e-01 86.3% 55.4%