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hypothetical_protein_psal_cds_698

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_698__YP_009430056__Pandoravirus_salinus__1349410

Identity

Accession:
YP_009430056 ↗
Protein ID:
hypothetical_protein_psal_cds_698
Kingdom:
euk

Quality

65.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 137-335
PDB
D2 medium residues 14-65
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.79 55.0 5.78e-01 76.9% 82.6%
3sngA00 1.10.575.10 Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease 0.74 58.0 3.62e-01 84.6% 52.1%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.74 56.0 4.66e-01 82.7% 48.3%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.72 48.0 4.93e-01 76.9% 73.5%
5zzjA02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.67 60.0 3.66e-01 100.0% 31.2%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 55.0 4.66e-01 94.2% 70.5%
7s3lA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.66 56.0 4.00e-01 98.1% 57.6%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 58.0 4.03e-01 100.0% 32.3%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.65 53.0 3.48e-01 90.4% 48.9%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.65 51.0 4.57e-01 88.5% 67.1%
1c5aA00 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.64 48.0 4.48e-01 80.8% 100.0%
2q2rA02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.64 54.0 3.60e-01 94.2% 38.4%
4trrG00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 53.0 3.45e-01 96.2% 31.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 50.0 3.39e-01 88.5% 26.6%
2qhaA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 49.0 2.99e-01 90.4% 23.5%
4e12A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 45.0 3.84e-01 82.7% 75.9%
2jvwA01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.60 41.0 4.00e-01 78.8% 65.0%
5ktkA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 48.0 2.82e-01 90.4% 13.9%
3afmB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 49.0 3.26e-01 96.2% 32.1%
2lc3A00 1.10.720.80 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.55 38.0 3.33e-01 76.9% 79.5%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3299681 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 69.0 7.02e-01 80.8% 80.0%
2420136 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 61.0 6.09e-01 75.0% 67.9%
3396126 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.90 65.0 3.77e-01 78.8% 10.7%
3461050 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 63.0 6.40e-01 75.0% 76.0%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 60.0 6.04e-01 75.0% 69.8%
3404584 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 62.0 6.58e-01 76.9% 86.7%
3628631 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 60.0 5.76e-01 75.0% 63.3%
3324307 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.86 59.0 5.41e-01 76.9% 56.9%
3438368 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.86 58.0 6.26e-01 75.0% 82.2%
3360537 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 62.0 6.96e-01 76.9% 100.0%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 71.0 6.23e-01 90.4% 88.0%
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.85 60.0 6.41e-01 76.9% 84.4%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 59.0 5.30e-01 76.9% 54.3%
3380603 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 58.0 6.14e-01 75.0% 82.2%
3434959 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 58.0 6.17e-01 76.9% 82.2%
3550264 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 56.0 6.20e-01 75.0% 90.0%
3331704 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 62.0 6.37e-01 82.7% 82.0%
3390129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.83 61.0 3.83e-01 76.9% 16.7%
3238357 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 52.0 6.03e-01 71.2% 97.1%
3349711 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 54.0 5.81e-01 71.2% 80.0%
3646855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 57.0 6.09e-01 76.9% 86.7%
3215203 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 54.0 6.05e-01 75.0% 90.0%
3245275 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 56.0 6.16e-01 76.9% 95.0%
3843694 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 56.0 3.81e-01 76.9% 21.2%
3399647 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 57.0 5.64e-01 78.8% 70.9%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 59.0 5.29e-01 82.7% 57.1%
3837673 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 55.0 5.82e-01 76.9% 82.2%
4028410 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 58.0 5.75e-01 76.9% 85.5%
3567626 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 4.09e-01 100.0% 86.5%
3370474 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 56.0 5.22e-01 80.8% 60.0%
3819371 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 57.0 5.58e-01 82.7% 70.9%
3423604 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 56.0 5.75e-01 76.9% 80.0%
3854754 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 54.0 6.00e-01 76.9% 95.0%
3433159 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 53.0 5.73e-01 71.2% 92.5%
3848693 145.1.1.37 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_2, F-box-like, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.78 67.0 4.01e-01 100.0% 84.3%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.77 68.0 4.06e-01 100.0% 40.7%
3643098 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 53.0 5.24e-01 78.8% 69.1%
None — 0.76 69.0 4.25e-01 100.0% 51.4%
3221036 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 53.0 5.54e-01 75.0% 84.4%
4284024 207.1.1.224 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29466, PF29477 0.76 65.0 4.13e-01 100.0% 65.5%
3727492 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 52.0 5.52e-01 76.9% 82.2%
3240954 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 53.0 5.89e-01 75.0% 95.0%
3180622 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 54.0 5.55e-01 76.9% 80.0%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 57.0 4.69e-01 84.6% 46.7%
3469135 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.75 67.0 3.98e-01 100.0% 44.7%
None — 0.75 68.0 3.83e-01 100.0% 25.7%
3448206 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 53.0 5.28e-01 76.9% 70.9%
3803894 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 51.0 4.58e-01 78.8% 50.7%
3467963 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 55.0 5.77e-01 82.7% 91.1%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.74 66.0 3.85e-01 100.0% 32.2%
3931559 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 51.0 5.44e-01 75.0% 84.4%
4061448 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 64.0 3.97e-01 100.0% 45.3%
3430952 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.74 66.0 3.79e-01 100.0% 30.0%
3998412 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 52.0 5.71e-01 82.7% 97.5%
3184851 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 56.0 4.84e-01 84.6% 57.6%
3834940 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 66.0 3.72e-01 100.0% 25.9%
3835205 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 65.0 3.67e-01 100.0% 25.6%
3244551 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 50.0 5.57e-01 75.0% 92.5%
3827935 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 53.0 5.59e-01 80.8% 88.9%
3934680 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 51.0 5.19e-01 76.9% 78.0%
3230376 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.72 63.0 3.68e-01 100.0% 31.6%
None — 0.72 64.0 4.03e-01 100.0% 62.6%
3228181 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 52.0 5.48e-01 82.7% 88.9%
3834480 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.71 61.0 3.66e-01 100.0% 40.5%
3802856 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 54.0 5.39e-01 88.5% 81.8%
3253203 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 52.0 5.28e-01 80.8% 86.0%
3736662 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 58.0 3.49e-01 100.0% 42.8%
3226930 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 48.0 5.10e-01 76.9% 86.7%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 58.0 4.80e-01 92.3% 56.7%
3834035 145.1.1.26 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › LRR_6, DUF7885 0.68 60.0 3.57e-01 100.0% 41.7%
5076914 563.2.1.0 ↗ alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like 0.68 54.0 4.20e-01 90.4% 39.2%
3700864 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 60.0 3.52e-01 100.0% 21.7%
3873597 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.62 42.0 3.28e-01 71.2% 83.5%
D3 medium residues 66-121
PDB