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hypothetical_protein_psal_cds_700

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_700__YP_008437727__Pandoravirus_salinus__1349410

Identity

Accession:: YP_008437727 ↗
Protein ID:: hypothetical_protein_psal_cds_700
Kingdom:: euk

Quality

72.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-111

PDB

Domain cluster: rep: hypothetical_protein_pqer_cds_854__YP_009483545__Pandoravirus_quercus__2107709__D58-147

D2 medium residues 112-283

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009480767__Pandoravirus_macleodensis__2107707__D109-271

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jzjC02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	27.0	3.33e-01	83.7%	73.1%
1y8cA02	2.20.25.110	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases	0.54	19.0	2.87e-01	82.6%	78.3%
4eq3A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	26.0	3.26e-01	85.5%	80.6%
2huhA01	2.60.40.1600	Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like	0.51	31.0	3.46e-01	92.4%	75.7%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5016404	330.4.1.1 ↗	a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC	0.63	22.0	3.07e-01	83.1%	61.3%
3711864	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.59	31.0	3.65e-01	80.8%	71.7%
3786013	11.1.1.376 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mid1	0.56	33.0	3.64e-01	86.6%	72.6%
5050588	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	25.0	2.85e-01	80.8%	55.4%

D3 medium residues 284-338

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kwhA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	49.0	4.93e-01	76.4%	96.4%
3lphC00	6.10.140.630	Special › Helix non-globular › Helix Hairpins ›	0.66	48.0	4.81e-01	80.0%	100.0%
3h6pC00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.65	51.0	5.08e-01	85.5%	92.9%
1chuA03	1.20.58.100	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain	0.64	54.0	4.68e-01	96.4%	64.8%
7e84A03	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.62	46.0	3.65e-01	81.8%	84.6%
1icrA00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.57	47.0	3.29e-01	100.0%	45.8%
2bskB00	1.10.287.810	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains	0.57	41.0	3.92e-01	78.2%	66.2%
3uoxB01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.56	47.0	3.06e-01	100.0%	39.0%
1nktA04	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.56	45.0	3.29e-01	96.4%	49.2%
1qrvA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.55	42.0	3.91e-01	87.3%	91.8%
3gzfD00	1.10.150.420	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus	0.53	34.0	3.02e-01	81.8%	40.7%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4545543	517.2.1.1 ↗	beta barrels › CBF-like › TraF › TraF › TrbI	0.71	55.0	3.79e-01	87.3%	28.1%
3168396	192.15.1.170 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › SWIRM-assoc_1	0.68	53.0	4.07e-01	85.5%	38.4%
4879470	5057.1.1.1 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb	0.66	50.0	4.58e-01	85.5%	61.3%
147759	2003.1.2.29 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8	0.56	47.0	3.66e-01	100.0%	86.5%