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hypothetical_protein_psal_cds_722

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_722__YP_008437771__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437771 ↗
Protein ID:
hypothetical_protein_psal_cds_722
Kingdom:
euk

Quality

61.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 364-391_403-581
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_23__YP_009480707__Pandoravirus_macleodensis__2107707__D422-484_525-668_688-706
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26128.2 best Gad2 30.8 3.80e-07 73.0% 83.2%
D2 medium residues 1-122
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_34__YP_008436470__Pandoravirus_salinus__1349410__D13-128
D3 medium residues 123-224
PDB
D4 medium residues 225-320_347-359
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v4eA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.67 49.0 3.61e-01 81.7% 29.6%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.63 52.0 5.10e-01 100.0% 83.2%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 51.0 5.40e-01 98.2% 98.0%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 42.0 4.23e-01 97.2% 68.8%
4o6yB00 1.20.120.1770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 52.0 4.23e-01 94.5% 82.9%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 53.0 5.19e-01 93.6% 88.0%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 42.0 4.01e-01 71.6% 70.3%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 53.0 4.49e-01 100.0% 87.4%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 51.0 5.19e-01 91.7% 98.2%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 51.0 5.22e-01 94.5% 97.1%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.59 45.0 4.27e-01 80.7% 76.7%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 50.0 5.13e-01 98.2% 96.2%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.59 38.0 4.12e-01 79.8% 78.0%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 51.0 5.14e-01 95.4% 98.2%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 43.0 4.35e-01 86.2% 78.9%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 47.0 4.84e-01 98.2% 95.1%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 48.0 4.52e-01 94.5% 77.9%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 44.0 4.01e-01 100.0% 68.2%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.52 47.0 4.50e-01 100.0% 91.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3754265 603.1.1.187 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DNA_repr_REX1B 0.64 49.0 5.38e-01 79.8% 96.7%
3658790 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.63 56.0 5.42e-01 96.3% 87.5%
3486748 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 53.0 5.47e-01 97.2% 96.2%
3451986 3291.1.1.79 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF1771 0.62 44.0 4.37e-01 74.3% 77.4%
3919843 604.1.1.124 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.61 53.0 5.01e-01 94.5% 90.0%
4019732 603.1.1.99 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.61 53.0 5.01e-01 95.4% 80.8%
3622615 604.1.1.172 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › 7TM_GPCR_Srx 0.60 51.0 5.22e-01 95.4% 96.2%
3621676 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 51.0 4.83e-01 93.6% 90.0%
3391380 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 49.0 4.97e-01 93.6% 92.4%
3214333 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 42.0 4.18e-01 76.1% 74.8%
4080313 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.58 52.0 4.82e-01 99.1% 86.4%
3642682 603.1.1.5 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.57 50.0 4.93e-01 96.3% 96.5%
3899959 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 48.0 4.93e-01 94.5% 97.1%
3497641 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.57 47.0 4.88e-01 97.2% 99.0%
3993997 604.1.1.139 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF7799 0.56 48.0 4.67e-01 94.5% 95.8%
3544537 604.1.1.63 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.56 48.0 4.73e-01 95.4% 99.1%
3406218 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.55 49.0 4.91e-01 97.2% 97.3%
3622196 604.1.1.63 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.55 48.0 4.68e-01 95.4% 96.7%
3913487 604.1.1.124 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.55 49.0 4.98e-01 99.1% 99.1%
3411883 604.1.1.63 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.55 47.0 4.57e-01 94.5% 95.0%
3623842 601.24.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 0.54 48.0 4.58e-01 100.0% 84.0%
3940784 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.53 45.0 4.54e-01 97.2% 93.6%
3906128 604.1.1.124 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.52 47.0 4.12e-01 99.1% 67.5%
3781820 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.26e-01 100.0% 41.9%
3736924 632.8.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.50 44.0 4.07e-01 100.0% 77.1%
D5 medium residues 672-746
PDB
D6 medium residues 747-821
PDB