←Back to structures
hypothetical_protein_psal_cds_725
Euk-VirPandoravirus_salinus
hypothetical_protein_psal_cds_725__YP_008437775__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008437775 ↗
- Protein ID:
- hypothetical_protein_psal_cds_725
- Kingdom:
- euk
Quality
66.7
mean pLDDT
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-113
D2
high
residues 126-295
D3
medium
residues 296-364_382-434
Domain cluster:
rep: hypothetical_protein_pdul_cds_164__YP_008318757__Pandoravirus_dulcis__1349409__D184-327
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n11A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.79 | 37.0 | 2.49e-01 | 100.0% | 13.4% |
| 5x56B00 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.63 | 34.0 | 3.72e-01 | 97.5% | 61.0% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.58 | 38.0 | 4.35e-01 | 86.1% | 96.4% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.57 | 38.0 | 4.40e-01 | 100.0% | 96.6% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 38.0 | 4.08e-01 | 100.0% | 81.2% |
| 1vdyA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 38.0 | 3.65e-01 | 100.0% | 60.0% |
| 4o6kA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 37.0 | 3.62e-01 | 100.0% | 63.2% |
| 5cy5B00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.54 | 44.0 | 4.13e-01 | 100.0% | 72.5% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 39.0 | 4.04e-01 | 100.0% | 84.8% |
| 1kgqA01 | 1.10.166.10 | Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain | 0.52 | 29.0 | 3.64e-01 | 95.9% | 92.9% |
| 2b1eA03 | 1.10.357.60 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.51 | 45.0 | 4.11e-01 | 100.0% | 89.3% |
| 2hqtK00 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 33.0 | 3.42e-01 | 100.0% | 68.4% |
| 5li7A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 41.0 | 2.90e-01 | 86.1% | 64.6% |
| 5b7cA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 37.0 | 3.92e-01 | 100.0% | 87.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945541 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.64 | 36.0 | 3.29e-01 | 91.8% | 41.2% |
| 3719665 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 43.0 | 4.64e-01 | 100.0% | 84.8% |
| 3739669 | 604.13.1.0 ↗ | alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like | 0.57 | 34.0 | 3.63e-01 | 93.4% | 66.7% |
| 3744220 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.54 | 38.0 | 4.01e-01 | 100.0% | 80.9% |
| 3939360 | 601.20.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipophorin-III › Apolipophorin-III | 0.54 | 39.0 | 3.28e-01 | 76.2% | 66.8% |
| 4019714 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.53 | 33.0 | 3.40e-01 | 95.9% | 62.5% |
| 4976355 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.53 | 41.0 | 3.05e-01 | 85.2% | 77.1% |
| 4879352 | 1030.1.1.1 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A | 0.52 | 36.0 | 3.46e-01 | 95.1% | 61.6% |
| 3705358 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 37.0 | 2.80e-01 | 100.0% | 28.6% |
| 3673586 | 109.4.1.224 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_CAF1_bind | 0.51 | 42.0 | 3.75e-01 | 100.0% | 63.5% |
| 4667477 | 633.21.1.6 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › Aim19 | 0.50 | 38.0 | 3.95e-01 | 100.0% | 85.1% |