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hypothetical_protein_psal_cds_740
Euk-VirPandoravirus_salinus
hypothetical_protein_psal_cds_740__YP_008437796__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008437796 ↗
- Protein ID:
- hypothetical_protein_psal_cds_740
- Kingdom:
- euk
Quality
70.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-129
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ashA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 38.0 | 3.62e-01 | 80.2% | 93.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3216101 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.59 | 41.0 | 3.13e-01 | 71.1% | 96.0% |
| 4014984 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 46.0 | 3.27e-01 | 95.0% | 69.7% |
D2
high
residues 155-305
D3
high
residues 311-412
Domain cluster:
rep: hypothetical_protein_TW95_gp1558__YP_009120527__Pandoravirus_inopinatum__1605721__D202-300
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.64 | 44.0 | 3.88e-01 | 71.6% | 93.6% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.57 | 46.0 | 4.06e-01 | 91.2% | 86.3% |
| 2qk2A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 45.0 | 3.52e-01 | 89.2% | 50.9% |
| 3ccyA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 41.0 | 3.65e-01 | 77.5% | 87.8% |
| 1dtoA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.55 | 38.0 | 3.84e-01 | 77.5% | 70.6% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 44.0 | 4.15e-01 | 89.2% | 95.2% |
| 1hxiA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 42.0 | 4.08e-01 | 84.3% | 75.9% |
| 4l9mA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.53 | 41.0 | 3.82e-01 | 83.3% | 77.4% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.53 | 38.0 | 3.90e-01 | 77.5% | 79.2% |
| 7ys6A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 46.0 | 3.44e-01 | 100.0% | 92.1% |
| 1zzpA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 40.0 | 3.91e-01 | 81.4% | 100.0% |
| 2l9mA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 35.0 | 3.29e-01 | 99.0% | 54.5% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 38.0 | 3.38e-01 | 77.5% | 82.8% |
| 1m56C02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.51 | 41.0 | 3.35e-01 | 88.2% | 64.8% |
| 3cprA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 44.0 | 3.23e-01 | 100.0% | 65.6% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.50 | 30.0 | 2.60e-01 | 95.1% | 38.2% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 40.0 | 3.45e-01 | 85.3% | 75.5% |
| 4xaxB02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.50 | 40.0 | 4.13e-01 | 95.1% | 89.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3757282 | 3352.1.1.25 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PIG-U | 0.62 | 44.0 | 2.92e-01 | 73.5% | 77.1% |
| 3271437 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 45.0 | 3.75e-01 | 81.4% | 68.3% |
| 3923962 | 109.4.1.390 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 | 0.58 | 43.0 | 3.53e-01 | 79.4% | 46.3% |
| 3797332 | 109.4.1.1449 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27576 | 0.57 | 41.0 | 3.46e-01 | 74.5% | 62.9% |
| 3834382 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 42.0 | 3.33e-01 | 80.4% | 78.1% |
| 3781815 | 109.4.1.1561 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_LAA1_C | 0.55 | 41.0 | 3.54e-01 | 79.4% | 78.1% |
| 3937637 | 109.4.1.264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 | 0.54 | 45.0 | 3.45e-01 | 90.2% | 53.2% |
| 3845925 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 31.0 | 2.94e-01 | 89.2% | 46.4% |
| 4839189 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 42.0 | 4.02e-01 | 84.3% | 89.3% |
| 3616543 | 109.3.1.229 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27576 | 0.54 | 40.0 | 3.50e-01 | 80.4% | 75.2% |
| 3297792 | 109.4.1.1543 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HDS, Mon2_C | 0.54 | 42.0 | 2.81e-01 | 85.3% | 49.2% |
| 3261586 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.54 | 34.0 | 3.12e-01 | 100.0% | 44.8% |
| 3948136 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.53 | 45.0 | 3.43e-01 | 90.2% | 77.3% |
| 3741033 | 109.4.1.1393 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26715 | 0.52 | 38.0 | 3.23e-01 | 78.4% | 89.2% |
| 3466456 | 109.4.1.361 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPH3 | 0.52 | 41.0 | 3.21e-01 | 86.3% | 43.0% |
| 3539086 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.51 | 37.0 | 3.60e-01 | 76.5% | 96.5% |
| 3586523 | 604.12.1.45 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PPP1R21_helical | 0.51 | 37.0 | 3.07e-01 | 75.5% | 54.9% |