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hypothetical_protein_psal_cds_760
Euk-VirPandoravirus_salinus
hypothetical_protein_psal_cds_760__YP_008437825__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008437825 ↗
- Protein ID:
- hypothetical_protein_psal_cds_760
- Kingdom:
- euk
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-68
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 39.0 | 3.94e-01 | 100.0% | 50.7% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.72 | 64.0 | 4.99e-01 | 100.0% | 89.7% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 52.0 | 4.35e-01 | 76.5% | 82.7% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 53.0 | 4.50e-01 | 79.4% | 89.8% |
| 2rd3D00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.70 | 50.0 | 3.49e-01 | 75.0% | 99.5% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 51.0 | 4.43e-01 | 76.5% | 98.0% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 49.0 | 4.33e-01 | 98.5% | 53.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 52.0 | 4.95e-01 | 100.0% | 71.4% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.65 | 57.0 | 3.66e-01 | 100.0% | 80.0% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.65 | 47.0 | 4.35e-01 | 98.5% | 61.2% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.64 | 46.0 | 4.08e-01 | 100.0% | 53.6% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 49.0 | 4.02e-01 | 100.0% | 46.3% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 48.0 | 4.22e-01 | 100.0% | 54.9% |
| 4x5mA00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 46.0 | 4.26e-01 | 97.1% | 61.6% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.62 | 47.0 | 4.31e-01 | 100.0% | 62.8% |
| 2b1eA01 | 1.20.58.1150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 50.0 | 4.63e-01 | 100.0% | 70.9% |
| 1zbtA01 | 6.10.140.1950 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 40.0 | 3.76e-01 | 98.5% | 56.6% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.60 | 39.0 | 3.51e-01 | 89.7% | 48.9% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 51.0 | 4.04e-01 | 95.6% | 48.6% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.59 | 43.0 | 3.59e-01 | 89.7% | 46.0% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.59 | 42.0 | 3.86e-01 | 100.0% | 57.3% |
| 4akgA14 | 1.20.1280.160 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 51.0 | 4.37e-01 | 95.6% | 92.7% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 49.0 | 4.20e-01 | 88.2% | 95.1% |
| 2wg7A00 | 1.20.90.10 | Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain | 0.59 | 46.0 | 3.82e-01 | 95.6% | 47.9% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 41.0 | 3.82e-01 | 72.1% | 94.0% |
| 1ewrA02 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.58 | 41.0 | 3.42e-01 | 95.6% | 42.9% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 47.0 | 4.32e-01 | 91.2% | 94.3% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 45.0 | 4.18e-01 | 86.8% | 94.3% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 34.0 | 3.14e-01 | 97.1% | 43.7% |
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.55 | 45.0 | 4.08e-01 | 100.0% | 92.2% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 49.0 | 4.10e-01 | 100.0% | 60.3% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.54 | 43.0 | 4.01e-01 | 88.2% | 83.9% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 47.0 | 4.09e-01 | 97.1% | 97.1% |
| 3feuA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 3.15e-01 | 88.2% | 67.2% |
| 1zoyA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.53 | 41.0 | 3.56e-01 | 89.7% | 81.2% |
| 3a7mA01 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.52 | 48.0 | 4.04e-01 | 100.0% | 61.8% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.52 | 48.0 | 4.66e-01 | 100.0% | 91.9% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 47.0 | 4.26e-01 | 98.5% | 91.2% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 45.0 | 4.17e-01 | 92.6% | 82.4% |
| 6ifsB02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.52 | 36.0 | 3.56e-01 | 73.5% | 100.0% |
| 4iluA02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.52 | 43.0 | 3.64e-01 | 91.2% | 68.5% |
| 6wh0A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 43.0 | 3.39e-01 | 95.6% | 90.1% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 47.0 | 4.24e-01 | 100.0% | 78.0% |
| 3gaeA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.50 | 45.0 | 3.07e-01 | 100.0% | 54.2% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.88e-01 | 100.0% | 75.6% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.81 | 60.0 | 6.33e-01 | 82.4% | 88.3% |
| 3731546 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.77 | 58.0 | 4.25e-01 | 79.4% | 70.6% |
| 3253225 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.73 | 66.0 | 6.11e-01 | 100.0% | 90.6% |
| 3567382 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.73 | 53.0 | 4.36e-01 | 100.0% | 45.2% |
| 4012566 | 633.24.1.3 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF6594 | 0.72 | 45.0 | 4.38e-01 | 94.1% | 57.3% |
| 3642152 | 102.5.1.9 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF7898 | 0.71 | 52.0 | 4.60e-01 | 100.0% | 53.0% |
| 4927922 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.69 | 41.0 | 4.40e-01 | 89.7% | 68.3% |
| 3173138 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.68 | 55.0 | 4.98e-01 | 97.1% | 65.6% |
| 3168273 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.68 | 43.0 | 4.44e-01 | 92.6% | 67.7% |
| 3433667 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.67 | 49.0 | 3.73e-01 | 76.5% | 65.3% |
| 3494198 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.67 | 52.0 | 3.67e-01 | 100.0% | 29.5% |
| 4958131 | 109.10.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin | 0.66 | 48.0 | 3.35e-01 | 75.0% | 40.5% |
| 3792413 | 150.1.1.89 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TRAM_LAG1_CLN8 | 0.66 | 56.0 | 3.99e-01 | 100.0% | 49.6% |
| 3689037 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 57.0 | 4.76e-01 | 100.0% | 92.5% |
| 3271437 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 45.0 | 3.25e-01 | 73.5% | 43.3% |
| 3711705 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 46.0 | 4.19e-01 | 94.1% | 58.9% |
| 3666817 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 50.0 | 4.64e-01 | 95.6% | 69.4% |
| 4968501 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.61 | 53.0 | 3.62e-01 | 95.6% | 42.6% |
| 3658236 | 604.12.1.69 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SRP68 | 0.61 | 51.0 | 4.08e-01 | 100.0% | 48.8% |
| 3543893 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.60 | 55.0 | 4.51e-01 | 100.0% | 73.3% |
| 3932846 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.60 | 54.0 | 3.80e-01 | 100.0% | 82.0% |
| 3220072 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 55.0 | 4.56e-01 | 100.0% | 59.1% |
| 5066592 | 1030.1.1.0 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 | 0.59 | 46.0 | 4.13e-01 | 88.2% | 82.0% |
| 3232748 | 109.4.1.1709 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7758 | 0.58 | 53.0 | 3.68e-01 | 100.0% | 45.7% |
| 3259751 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 47.0 | 4.44e-01 | 98.5% | 75.0% |
| 4520789 | 1204.1.1.0 ↗ | alpha bundles › Bacteriocin pyocin-S2 N-terminal domain › Bacteriocin pyocin-S2 N-terminal domain › Bacteriocin pyocin-S2 N-terminal domain | 0.57 | 47.0 | 3.44e-01 | 97.1% | 73.8% |
| 5053943 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 50.0 | 3.91e-01 | 100.0% | 67.3% |
| 5045841 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 51.0 | 4.31e-01 | 98.5% | 85.5% |
| 3927056 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.56 | 50.0 | 3.56e-01 | 100.0% | 79.5% |
| 3595029 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 47.0 | 4.00e-01 | 100.0% | 57.3% |
| 4970972 | 604.5.1.83 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › NfeD_membrane | 0.56 | 50.0 | 4.76e-01 | 100.0% | 85.0% |
| 4594071 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.56 | 50.0 | 4.68e-01 | 100.0% | 81.2% |
| 2320846 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.56 | 50.0 | 3.51e-01 | 97.1% | 96.9% |
| 4508763 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.55 | 43.0 | 3.90e-01 | 83.8% | 86.7% |
| 3913741 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 49.0 | 3.85e-01 | 100.0% | 60.7% |
| 5017736 | 3625.1.1.0 ↗ | alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain | 0.54 | 45.0 | 3.98e-01 | 95.6% | 66.7% |
| 60261 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.54 | 43.0 | 3.84e-01 | 85.3% | 83.2% |
| 3577448 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.54 | 49.0 | 4.46e-01 | 100.0% | 92.1% |
| 3595971 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 47.0 | 3.48e-01 | 95.6% | 61.8% |
| 3237399 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 43.0 | 3.15e-01 | 94.1% | 58.1% |
| 4021450 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.54 | 46.0 | 3.06e-01 | 98.5% | 83.9% |
| 4902520 | 5073.1.1.12 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M | 0.54 | 48.0 | 2.95e-01 | 100.0% | 17.0% |
| 3829016 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 48.0 | 3.92e-01 | 100.0% | 57.6% |
| 5053405 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.53 | 47.0 | 3.21e-01 | 100.0% | 50.0% |
| 3236092 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.52 | 38.0 | 3.67e-01 | 88.2% | 66.3% |
| 4185708 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.52 | 41.0 | 3.65e-01 | 83.8% | 82.1% |
| 4080592 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.52 | 42.0 | 3.82e-01 | 88.2% | 88.9% |
| 4874340 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.50 | 46.0 | 3.86e-01 | 100.0% | 67.6% |