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hypothetical_protein_psal_cds_841

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_841__YP_008437960__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437960 ↗
Protein ID:
hypothetical_protein_psal_cds_841
Kingdom:
euk

Quality

74.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-102
PDB
Domain cluster: rep: MoaE_superfamily_incomplete_domain__YP_008438746__Pandoravirus_salinus__1349410__D11-84
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.93 41.0 6.25e-01 88.5% 100.0%
1qsaA01 1.25.20.10 Mainly Alpha › Alpha Horseshoe › 70-kda Soluble Lytic Transglycosylase; domain 1 › Bacterial muramidases 0.55 42.0 2.83e-01 83.9% 29.8%
7toiA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 40.0 3.05e-01 85.1% 81.4%
1c02A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 38.0 3.19e-01 82.8% 69.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3720343 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.91 41.0 4.20e-01 88.5% 45.9%
3345495 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 42.0 5.48e-01 89.7% 94.0%
3563353 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 46.0 4.94e-01 100.0% 69.3%
None — 0.75 42.0 5.36e-01 96.6% 98.0%
3674428 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 45.0 5.33e-01 98.9% 93.3%
3578612 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.65 54.0 5.07e-01 100.0% 73.3%
3346715 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 52.0 5.51e-01 100.0% 98.7%
3331958 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.65 56.0 5.45e-01 100.0% 85.3%
4002233 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 50.0 3.09e-01 82.8% 22.0%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 52.0 5.42e-01 100.0% 96.2%
3394322 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 54.0 4.93e-01 100.0% 71.3%
3469374 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 51.0 3.16e-01 87.4% 22.1%
3696138 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 53.0 5.21e-01 100.0% 88.4%
None — 0.59 53.0 3.62e-01 97.7% 78.6%
3647912 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 53.0 3.55e-01 98.9% 70.6%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.59 49.0 4.91e-01 100.0% 87.8%
3681424 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 53.0 3.66e-01 98.9% 81.4%
None — 0.58 52.0 3.86e-01 100.0% 90.9%
3642941 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 3.49e-01 98.9% 69.7%
4013234 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 44.0 2.83e-01 85.1% 21.5%
4648967 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.57 46.0 3.08e-01 87.4% 29.6%
3430952 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.55 49.0 3.05e-01 97.7% 21.7%
3873597 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.54 45.0 4.11e-01 90.8% 69.6%
3295175 109.4.1.2172 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28518 0.52 46.0 3.22e-01 100.0% 44.1%
3479632 576.1.1.0 ↗ few secondary structure elements › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin extracellular domain 0.51 40.0 3.96e-01 87.4% 82.1%
D2 medium residues 103-158_193-223
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 41.0 3.69e-01 80.5% 83.1%
2uvaG06 1.20.930.70 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.52 39.0 3.61e-01 82.8% 68.9%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 37.0 3.91e-01 75.9% 92.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037963 1079.1.1.0 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA 0.58 40.0 2.93e-01 71.3% 94.9%
3890271 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 44.0 3.26e-01 81.6% 61.3%
4955374 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 40.0 2.95e-01 72.4% 91.1%
3937355 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.56 43.0 3.22e-01 82.8% 64.7%
3282529 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.55 40.0 3.81e-01 77.0% 89.5%
3666891 3718.1.1.13 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › KNOX1, KNOX2 0.51 39.0 3.62e-01 85.1% 63.9%
4067176 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 38.0 2.87e-01 79.3% 65.7%
D3 medium residues 159-192_224-279
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 34.0 3.54e-01 90.0% 54.0%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 32.0 2.91e-01 94.4% 36.0%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 35.0 3.60e-01 91.1% 59.5%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 33.0 3.55e-01 91.1% 61.3%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 37.0 4.11e-01 83.3% 81.9%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.56 25.0 3.01e-01 86.7% 59.0%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.55 35.0 4.09e-01 83.3% 93.5%
3dkxA01 3.40.1310.30 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.55 37.0 3.31e-01 97.8% 47.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 37.0 3.70e-01 97.8% 65.6%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 30.0 3.86e-01 84.4% 98.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 35.0 3.34e-01 95.6% 55.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.85e-01 85.6% 98.2%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.59e-01 74.4% 96.6%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 45.0 3.45e-01 98.9% 86.7%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.02e-01 87.8% 60.0%
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 43.0 3.42e-01 94.4% 92.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941845 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 36.0 4.51e-01 85.6% 100.0%
3528768 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 33.0 3.39e-01 91.1% 52.2%
3888324 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 36.0 3.41e-01 91.1% 57.1%
2733816 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.53 38.0 3.76e-01 91.1% 72.0%
4414952 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.19e-01 94.4% 38.1%
3538070 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.50 45.0 2.83e-01 100.0% 54.6%
4541933 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.50 43.0 3.61e-01 98.9% 53.8%