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hypothetical_protein_psal_cds_883

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_883__YP_008438036__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438036 ↗
Protein ID:
hypothetical_protein_psal_cds_883
Kingdom:
euk

Quality

63.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 135-230
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76
D2 medium residues 231-344
PDB
D3 medium residues 390-555
PDB
D4 medium residues 556-617
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_577__YP_008319365__Pandoravirus_dulcis__1349409__D139-197
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xheA03 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.62 54.0 4.34e-01 98.4% 67.8%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.60 50.0 3.89e-01 98.4% 57.0%
4nuuB02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 47.0 3.83e-01 95.2% 85.4%
2qrjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 44.0 3.22e-01 93.5% 44.0%
1rjgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 2.94e-01 96.8% 92.1%
2n04A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.54 42.0 3.60e-01 91.9% 51.4%
3fbiD00 1.10.10.1340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Mediator of RNA polymerase II, submodule Med31 (Soh1) 0.54 45.0 4.06e-01 98.4% 74.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3306574 109.4.1.144 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ints3_N 0.65 56.0 3.59e-01 100.0% 33.5%
3751431 109.27.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.62 54.0 4.17e-01 98.4% 42.9%
4337484 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.62 53.0 4.06e-01 98.4% 98.7%
4988166 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.61 52.0 4.01e-01 100.0% 95.3%
4066774 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.60 52.0 4.10e-01 100.0% 77.0%
3201517 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.60 49.0 3.37e-01 98.4% 32.7%
4289040 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.60 52.0 3.83e-01 100.0% 68.2%
4286824 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.59 39.0 3.46e-01 93.5% 46.7%
4935828 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.58 49.0 3.84e-01 98.4% 95.9%
3797666 3861.1.1.0 ↗ alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) 0.56 41.0 3.29e-01 82.3% 95.7%
5048577 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.54 44.0 4.12e-01 95.2% 97.5%
4928443 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 45.0 3.56e-01 95.2% 70.5%
3907738 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 37.0 3.66e-01 91.9% 70.0%
D5 medium residues 618-733
PDB