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hypothetical_protein_psal_cds_904

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_904__YP_008438084__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438084 ↗
Protein ID:
hypothetical_protein_psal_cds_904
Kingdom:
euk

Quality

71.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-68
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.91 67.0 6.82e-01 81.2% 80.4%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.88 61.0 6.79e-01 75.0% 92.1%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 58.0 6.20e-01 81.2% 85.7%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 64.0 5.22e-01 97.9% 50.6%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 51.0 5.46e-01 75.0% 85.4%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 60.0 4.61e-01 89.6% 50.0%
2wolA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.73 53.0 3.33e-01 75.0% 15.6%
4cj0A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.72 59.0 3.45e-01 93.8% 12.8%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.68 50.0 4.11e-01 81.2% 43.5%
3i4uA01 1.20.120.1080 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 50.0 3.96e-01 81.2% 56.7%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.65 52.0 3.51e-01 100.0% 22.2%
5jy1A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 55.0 3.44e-01 100.0% 24.4%
1l7vA00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.60 47.0 2.86e-01 85.4% 22.6%
3zrhA01 1.25.40.560 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 51.0 4.07e-01 95.8% 68.8%
1zp2A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 49.0 3.76e-01 100.0% 44.3%
2iexA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.57 40.0 3.97e-01 75.0% 70.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 66.0 7.19e-01 77.1% 87.5%
3173927 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 68.0 7.05e-01 85.4% 82.2%
3217628 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 65.0 7.04e-01 77.1% 87.5%
1807269 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 68.0 6.83e-01 81.2% 77.1%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.91 71.0 6.35e-01 91.7% 61.5%
3793366 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 62.0 6.69e-01 75.0% 85.0%
3635440 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 67.0 6.65e-01 91.7% 78.0%
3206488 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 66.0 6.51e-01 79.2% 86.0%
3688419 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 61.0 6.50e-01 79.2% 87.5%
3621592 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 66.0 6.52e-01 91.7% 80.0%
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 79.0 7.00e-01 97.9% 76.9%
3470430 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 60.0 6.48e-01 81.2% 90.0%
3579393 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 59.0 6.61e-01 83.3% 100.0%
3725291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 61.0 4.76e-01 83.3% 38.9%
3199525 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 68.0 6.72e-01 100.0% 88.0%
3215069 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 59.0 6.09e-01 83.3% 82.2%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 57.0 5.59e-01 81.2% 67.9%
3721004 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 58.0 4.67e-01 77.1% 42.2%
3208423 109.3.1.168 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 0.80 59.0 3.33e-01 85.4% 7.3%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 69.0 5.67e-01 100.0% 54.1%
3201310 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 67.0 6.19e-01 91.7% 88.3%
3228948 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 56.0 6.01e-01 85.4% 92.5%
3727179 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 60.0 6.14e-01 91.7% 88.9%
3688846 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 58.0 6.20e-01 83.3% 95.0%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.78 69.0 3.94e-01 100.0% 19.8%
3467883 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 55.0 5.12e-01 75.0% 60.0%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 67.0 5.48e-01 100.0% 54.1%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 64.0 6.21e-01 100.0% 83.6%
3693589 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 58.0 6.01e-01 85.4% 88.9%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.77 66.0 3.74e-01 100.0% 23.1%
3239562 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 68.0 6.52e-01 100.0% 90.9%
3727492 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 58.0 5.99e-01 91.7% 86.7%
3866275 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.76 67.0 3.92e-01 100.0% 31.7%
3223353 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 53.0 5.66e-01 81.2% 90.0%
3653326 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 60.0 6.22e-01 97.9% 93.3%
3833527 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 62.0 5.80e-01 91.7% 80.0%
3616135 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.75 55.0 5.05e-01 85.4% 60.0%
3827406 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 65.0 5.39e-01 100.0% 63.5%
3443639 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 61.0 6.06e-01 97.9% 88.0%
3810743 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.73 60.0 3.77e-01 95.8% 18.0%
3734528 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 64.0 5.39e-01 100.0% 60.0%
3787037 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 52.0 5.40e-01 79.2% 88.9%
3726694 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.72 62.0 3.63e-01 100.0% 24.3%
3460837 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.71 64.0 3.89e-01 100.0% 39.7%
3209617 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 62.0 3.68e-01 100.0% 29.0%
4028410 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 55.0 5.27e-01 85.4% 89.1%
3446267 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 60.0 5.73e-01 95.8% 81.8%
3222725 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 61.0 3.70e-01 97.9% 34.3%
3180622 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 53.0 5.25e-01 85.4% 82.0%
3239033 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 55.0 5.52e-01 95.8% 90.0%
3230101 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.64 55.0 3.76e-01 97.9% 38.2%
3225242 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.64 51.0 5.07e-01 89.6% 86.0%
3218285 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 49.0 4.15e-01 100.0% 56.8%
3205171 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 50.0 4.21e-01 95.8% 83.7%
3691901 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 48.0 4.09e-01 100.0% 82.5%
D2 high residues 73-250
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009480767__Pandoravirus_macleodensis__2107707__D109-271
D3 high residues 280-390
PDB