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hypothetical_protein_psal_cds_905

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_905__YP_008438086__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438086 ↗
Protein ID:
hypothetical_protein_psal_cds_905
Kingdom:
euk

Quality

79.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 57-69_89-160
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19228.5 best DUF5881 112.4 2.50e-32 89.4% 47.9%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.70 59.0 5.44e-01 90.6% 87.2%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.67 52.0 4.95e-01 82.4% 88.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.67 53.0 4.46e-01 84.7% 66.9%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.62 52.0 3.39e-01 91.8% 53.3%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 46.0 4.01e-01 78.8% 81.4%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 54.0 4.54e-01 100.0% 64.1%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 4.24e-01 98.8% 61.6%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 4.14e-01 92.9% 62.9%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.58 52.0 4.78e-01 100.0% 96.4%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.17e-01 100.0% 60.6%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 34.0 3.05e-01 82.4% 41.9%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 48.0 4.16e-01 94.1% 96.3%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 4.09e-01 88.2% 81.6%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 3.97e-01 100.0% 87.4%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.56 43.0 4.07e-01 82.4% 90.5%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 43.0 3.01e-01 82.4% 33.6%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.56 40.0 3.97e-01 74.1% 73.0%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 44.0 3.45e-01 94.1% 92.2%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.84e-01 90.6% 31.8%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 4.08e-01 88.2% 91.3%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 3.23e-01 83.5% 67.4%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 42.0 3.67e-01 90.6% 94.9%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 43.0 3.44e-01 95.3% 80.4%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 45.0 3.95e-01 100.0% 80.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.91e-01 95.3% 88.0%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 42.0 2.78e-01 100.0% 31.5%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.50 39.0 3.65e-01 84.7% 76.4%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3857553 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.69 54.0 4.01e-01 84.7% 88.2%
5057564 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.69 52.0 4.24e-01 81.2% 75.0%
3830082 4295.1.1.0 ↗ beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.68 58.0 4.14e-01 94.1% 88.0%
185414 3347.1.1.1 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.67 53.0 4.47e-01 84.7% 67.4%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 48.0 4.16e-01 76.5% 75.4%
3510894 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.65 51.0 3.74e-01 84.7% 35.7%
3176080 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 53.0 3.32e-01 90.6% 30.9%
3957486 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.64 47.0 4.23e-01 77.6% 90.0%
3169896 3321.1.1.1 ↗ a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.63 49.0 3.98e-01 83.5% 70.3%
3211840 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 51.0 4.39e-01 91.8% 91.4%
3246120 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 53.0 4.16e-01 98.8% 57.7%
3488488 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 53.0 3.99e-01 100.0% 87.7%
3704922 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.22e-01 89.4% 36.5%
3830571 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.59 51.0 3.87e-01 96.5% 82.8%
3589805 243.8.1.0 ↗ a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.58 40.0 3.95e-01 71.8% 84.2%
3308935 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 46.0 3.18e-01 89.4% 45.6%
4262950 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 48.0 3.29e-01 89.4% 33.2%
3265052 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 46.0 3.43e-01 88.2% 53.2%
3300916 5.1.4.231 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.58 46.0 3.24e-01 89.4% 51.3%
3367314 5.1.4.510 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_1 0.57 46.0 3.26e-01 90.6% 54.0%
4105457 11.1.1.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IalB 0.57 39.0 3.29e-01 70.6% 61.5%
4522761 3308.1.1.0 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.56 42.0 3.94e-01 81.2% 100.0%
3624597 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.56 45.0 4.35e-01 98.8% 78.0%
3926611 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.55 45.0 3.12e-01 90.6% 46.0%
3446490 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.55 45.0 2.99e-01 92.9% 89.7%
5009292 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 47.0 3.42e-01 98.8% 38.7%
3987555 2484.1.1.27 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA 0.53 41.0 3.11e-01 82.4% 84.9%
3998469 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.52 41.0 3.54e-01 89.4% 67.6%
4156379 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.51 40.0 3.26e-01 84.7% 75.8%
4382051 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.51 39.0 3.61e-01 100.0% 62.6%
4331578 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.50 37.0 3.48e-01 78.8% 75.2%