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hypothetical_protein_psal_cds_946

Euk-Vir

Pandoravirus_salinus

hypothetical_protein_psal_cds_946__YP_008438166__Pandoravirus_salinus__1349410

Identity

Accession:: YP_008438166 ↗
Protein ID:: hypothetical_protein_psal_cds_946
Kingdom:: euk

Quality

75.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 249-312

PDB

D2 medium residues 1-118

PDB

Domain cluster: rep: hypothetical_protein_psal_cds_1077__YP_008438365__Pandoravirus_salinus__1349410__D108-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19255.5 best	DUF5902	138.6	1.10e-40	92.4%	100.0%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2zdiB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.73	42.0	4.44e-01	84.7%	63.2%
1f1mA00	1.20.120.240	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6	0.62	38.0	3.44e-01	72.9%	45.1%
3pf0A00	1.20.1420.20	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif	0.54	41.0	2.96e-01	78.0%	44.7%
1mabG00	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.54	42.0	4.17e-01	84.7%	79.8%
2qe9B01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.50	36.0	3.28e-01	76.3%	55.1%
2r5uC00	1.10.860.10	Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A	0.50	35.0	3.34e-01	70.3%	87.0%

ECOD (26)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3483015	192.29.1.140 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Frag1	0.75	31.0	3.33e-01	75.4%	44.8%
1000517	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.73	42.0	4.53e-01	84.7%	66.3%
3931606	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.73	44.0	4.47e-01	87.3%	61.7%
3680007	3755.3.1.549 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF28649	0.72	42.0	4.04e-01	72.9%	53.1%
3244401	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.72	40.0	4.14e-01	71.2%	58.3%
4821107	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.66	45.0	3.25e-01	86.4%	25.6%
4026049	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.60	51.0	4.52e-01	89.8%	87.3%
3497316	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.59	42.0	3.84e-01	92.4%	54.4%
3253767	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.59	44.0	4.02e-01	78.8%	59.4%
4666900	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.58	45.0	4.40e-01	84.7%	76.0%
5041857	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.57	41.0	3.94e-01	89.0%	63.3%
3718200	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.57	42.0	4.16e-01	76.3%	72.8%
3704871	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.57	39.0	3.39e-01	70.3%	56.8%
4961944	192.15.1.225 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF4212	0.57	32.0	3.49e-01	72.9%	65.3%
3385758	514.1.1.1 ↗	alpha bundles › YutG-like › YutG-like › YutG-like › PgpA	0.57	41.0	3.77e-01	73.7%	100.0%
3396714	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.56	40.0	3.70e-01	72.9%	70.3%
4962497	5073.1.3.0 ↗	alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Potassium-transporting ATPase subunit KdpB transmembrane domain	0.56	42.0	3.42e-01	78.8%	77.8%
4442769	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.56	43.0	3.94e-01	91.5%	62.0%
4985469	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.55	40.0	3.82e-01	89.0%	66.4%
4953661	606.1.1.1 ↗	alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop	0.54	37.0	3.87e-01	76.3%	75.5%
3785168	7094.1.1.2 ↗	alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1	0.54	32.0	3.46e-01	78.0%	69.0%
4191334	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.53	40.0	3.89e-01	79.7%	70.9%
3594109	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.53	42.0	3.89e-01	85.6%	80.0%
5013382	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.52	40.0	3.30e-01	82.2%	86.2%
3944666	7577.1.1.1 ↗	a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2	0.52	36.0	2.58e-01	70.3%	83.7%
3397195	603.1.1.134 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Wbp11	0.50	39.0	3.70e-01	82.2%	70.4%

D3 medium residues 155-227_313-353

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6pl6B01	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.50	44.0	3.18e-01	100.0%	98.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4970032	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.61	34.0	4.00e-01	99.1%	77.5%
3892186	327.11.2.23 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_8	0.50	31.0	3.24e-01	74.6%	68.0%