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hypothetical_protein_psal_cds_963
Euk-VirPandoravirus_salinus
hypothetical_protein_psal_cds_963__YP_008438188__Pandoravirus_salinus__1349410
Identity
- Accession:
- YP_008438188 ↗
- Protein ID:
- hypothetical_protein_psal_cds_963
- Kingdom:
- euk
Quality
49.2
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 121-238
D2
medium
residues 5-90
D3
medium
residues 253-408_649-668
Domain cluster:
rep: hypothetical_protein_pmac_cds_23__YP_009480707__Pandoravirus_macleodensis__2107707__D422-484_525-668_688-706
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26128.2 best | Gad2 | 37.7 | 2.90e-09 | 84.7% | 73.7% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h37A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.74 | 55.0 | 6.08e-01 | 86.4% | 93.1% |
| 4wcwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.68 | 43.0 | 5.29e-01 | 79.5% | 100.0% |
| 2o5aA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 39.0 | 4.97e-01 | 72.2% | 100.0% |
| 2id1A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.65 | 39.0 | 4.98e-01 | 71.0% | 100.0% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 37.0 | 4.63e-01 | 83.5% | 98.1% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.60 | 37.0 | 4.53e-01 | 72.7% | 97.3% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.60 | 37.0 | 4.49e-01 | 73.9% | 98.1% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 27.0 | 3.60e-01 | 88.6% | 87.0% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 33.0 | 2.82e-01 | 77.8% | 36.1% |
| 1u9dA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 30.0 | 3.53e-01 | 72.7% | 76.2% |
| 1rl1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 27.0 | 3.53e-01 | 90.3% | 89.1% |
| 2pttB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 23.0 | 2.82e-01 | 73.9% | 60.2% |
| 2qqzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 31.0 | 3.74e-01 | 88.6% | 91.3% |
| 4qb5D00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 34.0 | 4.00e-01 | 71.0% | 97.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3273326 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.84 | 72.0 | 6.18e-01 | 88.6% | 68.5% |
| 3268750 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.84 | 65.0 | 6.55e-01 | 85.8% | 79.4% |
| 3272557 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.83 | 65.0 | 6.53e-01 | 87.5% | 79.4% |
| 3274698 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.82 | 70.0 | 6.19e-01 | 88.1% | 84.2% |
| 3632181 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.82 | 70.0 | 6.86e-01 | 88.6% | 83.8% |
| 4156614 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.80 | 56.0 | 6.34e-01 | 84.1% | 91.9% |
| 4495995 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.79 | 54.0 | 6.23e-01 | 85.2% | 93.8% |
| 3195886 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.77 | 71.0 | 5.43e-01 | 95.5% | 63.6% |
| 3276222 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.77 | 64.0 | 5.80e-01 | 86.4% | 95.7% |
| 4992877 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.64 | 50.0 | 4.38e-01 | 80.1% | 73.2% |
| 3886582 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.64 | 39.0 | 4.60e-01 | 72.2% | 87.5% |
| 3744790 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.63 | 37.0 | 4.40e-01 | 71.6% | 86.1% |
| 3591232 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.62 | 46.0 | 4.74e-01 | 75.6% | 97.6% |
| 5078640 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.62 | 36.0 | 4.62e-01 | 79.0% | 100.0% |
| 4998245 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.62 | 46.0 | 4.93e-01 | 81.8% | 88.4% |
| 3594093 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 43.0 | 4.04e-01 | 75.0% | 58.6% |
| 3567156 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.58 | 45.0 | 4.17e-01 | 80.7% | 88.9% |
| 3764706 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.58 | 45.0 | 4.00e-01 | 80.7% | 91.2% |
| 3497819 | 316.1.1.16 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DZF_N | 0.57 | 45.0 | 4.44e-01 | 81.8% | 93.2% |
| 4053985 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.56 | 42.0 | 4.55e-01 | 85.2% | 94.5% |
| 3735876 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 43.0 | 3.86e-01 | 81.2% | 73.8% |
| 4928562 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.54 | 32.0 | 4.12e-01 | 76.7% | 100.0% |
| 4121829 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.54 | 43.0 | 4.55e-01 | 84.7% | 100.0% |
| 3931356 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.53 | 37.0 | 3.77e-01 | 71.6% | 85.1% |
| 5010537 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 25.0 | 3.59e-01 | 87.5% | 100.0% |
| 3972599 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 34.0 | 3.68e-01 | 73.9% | 77.3% |
D4
medium
residues 409-463