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hypothetical_protein_pv_205
Euk-VirPithovirus_sibericum
hypothetical_protein_pv_205__YP_009001107__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009001107 ↗
- Protein ID:
- hypothetical_protein_pv_205
- Kingdom:
- euk
Quality
82.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-88
Domain cluster:
rep: hypothetical_protein_pv_69__YP_009000971__Pithovirus_sibericum__1450746__D3-123
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3v7dD01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.64 | 51.0 | 4.90e-01 | 88.2% | 83.0% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.63 | 43.0 | 3.58e-01 | 70.6% | 56.2% |
| 3ehmA03 | 1.20.120.840 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain | 0.60 | 48.0 | 4.39e-01 | 89.4% | 98.3% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 34.0 | 3.57e-01 | 78.8% | 66.2% |
| 2imgA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 37.0 | 3.09e-01 | 71.8% | 39.6% |
| 1yt3A03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.55 | 36.0 | 3.66e-01 | 85.9% | 68.3% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 37.0 | 3.23e-01 | 70.6% | 68.1% |
| 2r7rA08 | 1.20.120.1400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 32.0 | 3.19e-01 | 89.4% | 58.1% |
| 3tadC03 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.51 | 42.0 | 4.03e-01 | 91.8% | 91.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3613364 | 108.1.1.27 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 | 0.59 | 42.0 | 3.95e-01 | 75.3% | 96.2% |
| 3934745 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 41.0 | 3.44e-01 | 75.3% | 47.6% |
| 3945983 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.55 | 42.0 | 3.63e-01 | 83.5% | 93.6% |
| 3596129 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 46.0 | 2.60e-01 | 100.0% | 13.1% |
| 3570048 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 37.0 | 3.80e-01 | 72.9% | 91.3% |
| 3592099 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 36.0 | 3.98e-01 | 71.8% | 95.4% |
D2
high
residues 98-189
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qeuB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.74 | 50.0 | 4.34e-01 | 72.8% | 47.4% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.65 | 51.0 | 4.98e-01 | 82.6% | 83.0% |
| 4qfvC02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.63 | 39.0 | 4.51e-01 | 71.7% | 89.2% |
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.61 | 43.0 | 4.56e-01 | 72.8% | 97.5% |
| 2pbeA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 43.0 | 3.85e-01 | 73.9% | 100.0% |
| 4bszB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.60 | 53.0 | 4.53e-01 | 98.9% | 65.3% |
| 1k1aA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.59 | 52.0 | 3.95e-01 | 100.0% | 53.5% |
| 3deoA02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.59 | 52.0 | 4.50e-01 | 100.0% | 62.3% |
| 2f37A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.58 | 51.0 | 3.79e-01 | 100.0% | 58.7% |
| 5z2mB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.57 | 51.0 | 4.48e-01 | 100.0% | 86.9% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.52 | 37.0 | 3.80e-01 | 75.0% | 88.8% |
| 1us5A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 38.0 | 3.31e-01 | 82.6% | 96.8% |
| 3ce9A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 39.0 | 3.10e-01 | 82.6% | 95.4% |
| 8gpsA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.50 | 42.0 | 4.05e-01 | 98.9% | 81.0% |
| 1xkzC00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 44.0 | 3.29e-01 | 100.0% | 72.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4998411 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.67 | 47.0 | 5.18e-01 | 72.8% | 100.0% |
| 3296087 | 109.3.1.205 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28612 | 0.63 | 55.0 | 4.11e-01 | 97.8% | 39.5% |
| 4956162 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.59 | 40.0 | 4.34e-01 | 70.7% | 90.7% |
| 4027261 | 109.4.1.916 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_COPA_B | 0.59 | 40.0 | 2.90e-01 | 81.5% | 25.6% |
| 4535556 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 41.0 | 2.70e-01 | 97.8% | 15.5% |
| 3228201 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 41.0 | 3.33e-01 | 76.1% | 65.4% |
| 4016313 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.57 | 50.0 | 3.51e-01 | 100.0% | 38.4% |
| 3593488 | 109.4.1.916 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_COPA_B | 0.56 | 39.0 | 2.88e-01 | 81.5% | 26.3% |
| 3573743 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 43.0 | 3.62e-01 | 95.7% | 49.7% |
| 3877350 | 109.46.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40, Beta-prop_NOL10_N, Beta-prop_IFT122_1st | 0.54 | 42.0 | 2.70e-01 | 97.8% | 16.7% |
| 4025663 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.53 | 41.0 | 3.53e-01 | 97.8% | 51.0% |
| 3215994 | 109.46.1.12 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40, Beta-prop_VPS8 | 0.53 | 41.0 | 2.66e-01 | 97.8% | 16.8% |
| 4027843 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.53 | 43.0 | 3.94e-01 | 100.0% | 67.2% |
| 3941162 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 37.0 | 3.16e-01 | 77.2% | 65.9% |
| 5010701 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 42.0 | 3.32e-01 | 90.2% | 56.0% |
| 3183072 | 109.4.1.2187 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14, HAT_PRP39_N, HAT_PRP39_C | 0.51 | 44.0 | 3.07e-01 | 100.0% | 46.8% |
| 3355930 | 109.4.1.1495 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 | 0.51 | 44.0 | 4.12e-01 | 98.9% | 82.6% |
| 3941327 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.51 | 41.0 | 3.79e-01 | 100.0% | 68.0% |
D3
medium
residues 353-457
Domain cluster:
rep: hypothetical_protein_pv_199__YP_009001101__Pithovirus_sibericum__1450746__D366-451