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hypothetical_protein_pv_231
Euk-VirPithovirus_sibericum
hypothetical_protein_pv_231__YP_009001133__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009001133 ↗
- Protein ID:
- hypothetical_protein_pv_231
- Kingdom:
- euk
Quality
76.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 206-283
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1axdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 42.0 | 3.56e-01 | 73.1% | 57.7% |
D2
medium
residues 1-57_129-153
Domain cluster:
representative
D3
medium
residues 58-128_154-202
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.54 | 36.0 | 3.48e-01 | 97.5% | 58.0% |
| 3jtyB01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.54 | 43.0 | 3.02e-01 | 85.0% | 30.6% |
| 1v9nA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.53 | 48.0 | 3.84e-01 | 98.3% | 81.1% |
| 5a67A00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 39.0 | 3.33e-01 | 80.0% | 54.9% |
| 2fcbA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 31.0 | 3.61e-01 | 95.0% | 81.6% |
| 5dl5A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.52 | 40.0 | 2.77e-01 | 80.8% | 99.8% |
| 1vbiA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.51 | 45.0 | 3.65e-01 | 98.3% | 82.3% |
| 1rfmA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.50 | 45.0 | 3.73e-01 | 98.3% | 74.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3716770 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.58 | 27.0 | 2.87e-01 | 75.0% | 47.6% |
| 3604240 | 71.1.1.25 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF6612 | 0.57 | 47.0 | 3.87e-01 | 86.7% | 93.8% |
| 3229295 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.55 | 48.0 | 3.94e-01 | 96.7% | 80.0% |
| 4339003 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.55 | 47.0 | 3.54e-01 | 93.3% | 95.7% |
| 3661717 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.55 | 48.0 | 3.97e-01 | 99.2% | 72.6% |
| 3513270 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.54 | 36.0 | 3.98e-01 | 90.8% | 85.3% |
| 3353445 | 71.1.1.14 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 | 0.53 | 43.0 | 3.35e-01 | 84.2% | 89.9% |
| 3660680 | 109.3.1.348 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › ANKRD13_C | 0.53 | 42.0 | 2.88e-01 | 84.2% | 62.0% |
| 4652602 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.53 | 45.0 | 3.33e-01 | 93.3% | 94.7% |
| 3769191 | 71.1.1.14 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 | 0.52 | 42.0 | 3.26e-01 | 85.0% | 87.3% |
| 3829376 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 37.0 | 3.51e-01 | 90.8% | 60.7% |
| 3879431 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.93e-01 | 92.5% | 82.9% |
| 3368259 | 71.1.1.14 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 | 0.52 | 42.0 | 3.47e-01 | 84.2% | 94.6% |
| 3624262 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.52 | 35.0 | 3.31e-01 | 97.5% | 55.3% |
| 3298595 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.51 | 43.0 | 4.05e-01 | 95.0% | 87.1% |
| 3920843 | 71.1.1.14 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 | 0.51 | 39.0 | 3.39e-01 | 80.8% | 87.4% |
| 3884299 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.51 | 40.0 | 4.00e-01 | 90.0% | 83.3% |
| 4344924 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.51 | 39.0 | 3.21e-01 | 80.8% | 45.7% |
| 4626453 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.51 | 38.0 | 3.14e-01 | 80.8% | 43.7% |
| 3914909 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.50 | 39.0 | 3.96e-01 | 90.0% | 83.3% |
| 3283544 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.50 | 39.0 | 3.02e-01 | 80.8% | 53.6% |
| 2581320 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 44.0 | 4.37e-01 | 96.7% | 96.0% |
| 3564215 | 71.1.1.14 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › GPCR_chapero_1 | 0.50 | 40.0 | 3.28e-01 | 85.0% | 90.6% |