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hypothetical_protein_pv_245

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_245__YP_009001147__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009001147 ↗
Protein ID:
hypothetical_protein_pv_245
Kingdom:
euk

Quality

74.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-88
PDB
Domain cluster: rep: hypothetical_protein_pv_328__YP_009001230__Pithovirus_sibericum__1450746__D13-91
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.64 34.0 3.68e-01 73.2% 60.9%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.57 42.0 3.78e-01 92.7% 56.5%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 44.0 3.50e-01 86.6% 42.6%
3ehmA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.55 45.0 4.06e-01 92.7% 94.1%
4cgrB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 41.0 3.19e-01 90.2% 64.9%
3zfiA00 1.10.890.40 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.50 41.0 4.04e-01 95.1% 91.4%
3h5xA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 38.0 3.44e-01 82.9% 72.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244680 145.1.1.2 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Elongin_A 0.71 54.0 5.46e-01 97.6% 82.5%
4001181 145.1.1.2 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Elongin_A 0.70 51.0 4.63e-01 98.8% 57.3%
3244032 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 54.0 5.52e-01 98.8% 86.3%
4547515 145.1.1.2 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Elongin_A 0.62 55.0 4.78e-01 98.8% 88.8%
3177137 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 42.0 4.25e-01 84.1% 78.8%
4015134 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.56 43.0 4.16e-01 85.4% 72.6%
3585543 108.1.1.183 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › SPARC_Ca_bdg, EF-hand_5, EF-hand_8 0.55 45.0 2.84e-01 87.8% 39.5%
3581247 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.54 42.0 4.09e-01 84.1% 76.7%
3997224 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 43.0 3.64e-01 89.0% 72.9%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.53 33.0 3.40e-01 79.3% 65.0%
4134971 603.1.1.225 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, PF26585 0.51 41.0 3.21e-01 89.0% 67.0%
D2 medium residues 89-196
PDB
Domain cluster: rep: hypothetical_protein_pv_315__YP_009001217__Pithovirus_sibericum__1450746__D125-214
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 43.0 4.51e-01 72.2% 79.2%
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.60 43.0 4.59e-01 85.2% 83.5%
3grlA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 49.0 3.19e-01 100.0% 36.6%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.57 40.0 4.15e-01 72.2% 99.0%
5gxxA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 45.0 3.09e-01 100.0% 57.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252563 109.3.1.171 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011 0.57 50.0 4.16e-01 100.0% 69.5%
3309758 109.4.1.1133 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › C23H4_16c_N 0.56 44.0 4.01e-01 85.2% 86.2%
3424819 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 44.0 2.87e-01 90.7% 27.7%
2895133 173.1.1.0 ↗ alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like 0.52 29.0 3.27e-01 91.7% 70.2%
D3 medium residues 197-256
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x28A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.62 51.0 4.24e-01 95.0% 79.6%
3as5A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 48.0 3.53e-01 98.3% 33.7%
6xssA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 46.0 4.51e-01 96.7% 87.0%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.56 40.0 4.06e-01 78.3% 96.6%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 34.0 3.15e-01 95.0% 48.7%
2ap1A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 43.0 3.13e-01 88.3% 40.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838463 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.68 49.0 5.34e-01 76.7% 100.0%
3215991 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 38.0 3.76e-01 73.3% 90.8%
1002432 5071.3.1.1 ↗ alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 › DUF465 0.55 34.0 3.15e-01 95.0% 48.7%
3884503 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.50 42.0 2.85e-01 98.3% 50.8%
D4 medium residues 417-480
PDB