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hypothetical_protein_pv_25
Euk-VirPithovirus_sibericum
hypothetical_protein_pv_25__YP_009000927__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009000927 ↗
- Protein ID:
- hypothetical_protein_pv_25
- Kingdom:
- euk
Quality
72.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-197
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.56 | 36.0 | 3.86e-01 | 100.0% | 73.5% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.56 | 27.0 | 3.11e-01 | 78.4% | 60.8% |
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.55 | 35.0 | 3.57e-01 | 99.5% | 62.2% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.54 | 31.0 | 3.90e-01 | 87.6% | 93.8% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.54 | 31.0 | 4.00e-01 | 88.7% | 98.2% |
| 1umzA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 38.0 | 3.43e-01 | 71.6% | 56.2% |
| 4eg9A00 | 2.50.20.40 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.53 | 37.0 | 3.51e-01 | 70.1% | 93.5% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.53 | 30.0 | 3.17e-01 | 88.7% | 61.0% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.53 | 30.0 | 3.66e-01 | 85.1% | 86.3% |
| 2iecD00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.52 | 31.0 | 3.80e-01 | 70.1% | 94.0% |
| 3kf3A02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.52 | 36.0 | 3.77e-01 | 70.1% | 81.4% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 30.0 | 3.22e-01 | 88.1% | 65.1% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 40.0 | 4.25e-01 | 100.0% | 94.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3398694 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.73 | 37.0 | 5.04e-01 | 100.0% | 91.4% |
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.65 | 29.0 | 4.33e-01 | 93.8% | 100.0% |
| 3685667 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.61 | 37.0 | 4.50e-01 | 86.1% | 95.0% |
| 3434817 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.60 | 37.0 | 4.54e-01 | 84.0% | 96.7% |
| 3497302 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 39.0 | 4.46e-01 | 70.1% | 90.0% |
| 4373556 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.59 | 42.0 | 4.31e-01 | 72.7% | 98.9% |
| 4991389 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.57 | 44.0 | 3.95e-01 | 80.4% | 71.4% |
| 4992294 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.57 | 43.0 | 3.92e-01 | 76.8% | 74.0% |
| 4640212 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.57 | 44.0 | 3.79e-01 | 80.4% | 70.3% |
| 3485290 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.56 | 39.0 | 3.70e-01 | 70.6% | 66.8% |
| 3840641 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.56 | 38.0 | 3.84e-01 | 76.8% | 67.7% |
| 7410 | 219.1.1.64 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PMT_C3 | 0.55 | 35.0 | 3.58e-01 | 99.5% | 62.5% |
| 3094739 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.55 | 28.0 | 3.31e-01 | 100.0% | 67.1% |
| 3409707 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.54 | 30.0 | 3.78e-01 | 99.5% | 88.2% |
| 4158607 | 71.1.1.5 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF576 | 0.54 | 38.0 | 3.56e-01 | 70.6% | 93.2% |
| 3716770 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.54 | 21.0 | 2.69e-01 | 93.3% | 58.1% |
| 2581320 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 33.0 | 3.99e-01 | 73.2% | 96.0% |
| 3597380 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 29.0 | 3.51e-01 | 100.0% | 85.8% |