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hypothetical_protein_pv_281

Euk-Vir

Pithovirus_sibericum

hypothetical_protein_pv_281__YP_009001183__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009001183 ↗
Protein ID:
hypothetical_protein_pv_281
Kingdom:
euk

Quality

77.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-99
PDB
Domain cluster: rep: hypothetical_protein_pv_278__YP_009001180__Pithovirus_sibericum__1450746__D6-91
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dvpA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 45.0 4.01e-01 100.0% 79.3%
5noeA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 43.0 4.36e-01 95.8% 100.0%
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.50 41.0 4.13e-01 93.7% 97.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510039 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 43.0 4.19e-01 80.0% 98.2%
4255610 11.1.1.154 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.51 39.0 3.06e-01 82.1% 38.6%
4951139 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 39.0 3.84e-01 82.1% 83.0%
D2 high residues 103-278
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.59 38.0 4.54e-01 96.6% 95.8%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.57 32.0 4.06e-01 80.7% 94.9%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.57 39.0 4.39e-01 88.6% 88.5%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 44.0 4.12e-01 90.3% 69.6%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.54 43.0 4.23e-01 93.8% 77.7%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 4.05e-01 100.0% 90.2%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.52 47.0 4.17e-01 98.9% 95.6%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 44.0 3.02e-01 93.8% 84.5%
3q34A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.51 46.0 4.62e-01 100.0% 98.3%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 4.27e-01 92.0% 95.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164281 5069.1.1.92 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › CcmF_C 0.63 34.0 4.41e-01 97.2% 92.0%
4556083 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.62 41.0 4.67e-01 96.0% 90.0%
4944961 4121.1.1.19 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF27230 0.61 37.0 2.90e-01 92.0% 28.8%
3829563 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.57 43.0 4.45e-01 100.0% 82.4%
185414 3347.1.1.1 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.57 39.0 4.40e-01 88.6% 89.1%
3712989 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.55 45.0 4.23e-01 100.0% 71.9%
3330368 9.3.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N 0.53 44.0 4.46e-01 93.2% 86.7%
4025179 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 46.0 4.38e-01 93.2% 80.0%
3606318 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.52 46.0 4.25e-01 100.0% 74.5%
3408261 243.3.1.35 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.52 34.0 3.84e-01 83.0% 83.5%
4021785 1100.1.1.0 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein 0.52 36.0 3.25e-01 71.0% 84.6%
142524 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.51 46.0 4.63e-01 100.0% 98.8%
3706756 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.50 42.0 3.61e-01 88.1% 65.5%